RNA id: TCONS_00021455


Basic Information

Item Value
RNA id TCONS_00021455
length 2007
RNA type mRNA
GC content 0.44
exon number 8
gene id XLOC_010978
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43014417 ~ 43026273 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTCTCCAAGCGCGCGCGCTTGACTCAGCTCTCTTTCCCTCTTCATAATTAATAACCGGGTTAAAAATACCCGGCGCGTGCAGTGCTGGTTCTGTAGAAAGAGAGCGGCTGGTTTGAGTTGAGTTGTGTTCGGGACGGAGCCAACCTGGATTTCTCCTTGTTTAGTCGCCTCCTCCTCCCTTCATGACATCAACACTGCGGAGGGAGCCGCCGCGGCGCGCGCTCTGCTGCAGAACAACGCCAGTGCGCAAAGCGGATCGTGCGGTATTGATGAGCGATTGGTGATCTGTCAGGATGTCGCTGTACGCTTCTCAGATTAAAGCGTTTAAAGGCTCCGAGCCCAAAACACTTGGTGCTATTGAGATCATCATTGGTGTTTTGACTGTCATTTTGAGCACAATCGTGTACAAGCTGCACTATCATATCCAGCGGGAGATCATCATCCTCATTGTGAATGGCGCTCagCTCCTCATTACTGGTATTCTCCTGGTGCACACTGGGAGGAAGCCGTCCAAATGTCTGGTGCTGACGACCATTGTTCTGCAGTTACTAACAGCAGCATTTGATATTGTTGGATTTGGGCTCATGGCCAGACACATCCCATTCAGAGGAGAGTCATACTACTACAGGGACACCGAGTGGTGTTGTGACCCACTTCACTCTGTTTGGGCTTGCTGTGGAGAAGGAGAGAAAGGGGGACACAAAGAGTTCTTAGTGAACGGGATCTTGGGGACGCTGATCGGTTGCCTGGTGTTAGCATGTATCATTGGTTTGGTTGTGTCTCTGTTTGGGGTCTACGCTCTTTCTGTTAGTGCCATTAAGGAGCTGACCCCCATCCCTCACTCCACAGCAAACCAACATTACGGTGTTATTGTTCAGTCCCAGAACGCAATCCATGCTGGGAACTGACACACTGAGAGACGTTCAGAGCAGAAGGGTGCAGTTTTAGCACACTTTTACACCAACTGCAAAAGAGGACTGTTTCACCTAAAAACCACTCACAGGTAAACAACCaccactacaacaacaacaacaactacaaaaaaaacaacctttTGTGATGCTGTAAATACTTTTTTCACAAATAAAGAATGGATAAAATCTCGTTTTTTGCTTGGCTCTCGCTGTCACAGCCTGTAGGACTGCTGAATGCTCGACTCAATAGTTATTCGTGCCTCCTTAATTTTCACTCTTAAAAATGAAGCTTCTTAGCATGAAACGTCCGAATCCAGTGTTTTAGACATGCGCTAGAAGGGTAAGTGTGCTTATTGTTCATAGGGTTTGTGAATTTCAGCATTAAGTGCGTAAATGGGGAATGAGAACGGTAAGAAGGTTGTGATTTGGTCTTGTTTTTGTAGCATTTTGTACCACTTTTTGCATGAATCTCTTTGTATTAACGTTTGTTTTAGCCACATGAGGACACACAGGGCAACATCTATCAAGTTCAATCGAATCACAATTTGAGAAAtctctatttaaaaactaaacatcGTAAGCAGGCCAAATCGTGTTACAAACATGTGCTTACATAATAAAAGCTTGATAAATGTGGCTCGTGTTTAGTGAAACTCCTCTAAAGCAGAGTATTGTGAAGTTTAAAACACCAGtgagtaactttaaaaaaaagcatcgCTTGGCTTTTTTGTCATCTCGTTTTATCCGTACTGATACTTCAGGAAAGCTATGATGACTGCCAACTCTGTAAGTGCCACCAATTGTGACCAAAATCATGGACACCTATTGACTAAAGCTCAGAGGTTGAACCCTCGGTCAAGGGCTCGACTTTGGTGATGTAAAAATCCTCTTGTGGAAGCATGTGTTGTTCGTTCTGTGTCTGTAGATCTTGGTCTTTATGACAGCATGTGAGATTTACATCGTGCCTGTTCTCCGTGACCTCTGTAGTGATGTGTAGTAAAACAGAAACCTTGTAGTGTGTAGTTATATGgccgtgtttgtgtttgtatctgACCGAATGATATTTcaaaataaacttgatttaatacACA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8110 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000156820

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021453 lncRNA downstream 2990 43003153 ~ 43011427 (-) False XLOC_010977
TCONS_00022227 lncRNA downstream 20525 42974547 ~ 42993892 (-) True XLOC_010976
TCONS_00021450 lncRNA downstream 20553 42974547 ~ 42993864 (-) False XLOC_010976
TCONS_00021833 lncRNA downstream 39877 42973085 ~ 42974540 (-) True XLOC_010975
TCONS_00021832 lncRNA downstream 1276490 41726666 ~ 41737927 (-) True XLOC_010944
TCONS_00022228 lncRNA upstream 92840 43119113 ~ 43124227 (-) True XLOC_010981
TCONS_00022229 lncRNA upstream 332652 43358925 ~ 43368871 (-) True XLOC_010987
TCONS_00021474 lncRNA upstream 562370 43588643 ~ 43742343 (-) True XLOC_010988
TCONS_00021834 lncRNA upstream 1128211 44154484 ~ 44159865 (-) True XLOC_010992
TCONS_00022230 lncRNA upstream 1154502 44180775 ~ 44289374 (-) False XLOC_010993
TCONS_00021451 mRNA downstream 2916 43000828 ~ 43011501 (-) False XLOC_010977
TCONS_00021452 mRNA downstream 2919 43003047 ~ 43011498 (-) False XLOC_010977
TCONS_00021454 mRNA downstream 2947 43003317 ~ 43011470 (-) True XLOC_010977
TCONS_00021449 mRNA downstream 44819 42968097 ~ 42969598 (-) True XLOC_010974
TCONS_00021448 mRNA downstream 49225 42938859 ~ 42965192 (-) True XLOC_010973
TCONS_00021460 mRNA upstream 1806 43028079 ~ 43041324 (-) False XLOC_010979
TCONS_00021461 mRNA upstream 1807 43028080 ~ 43041450 (-) False XLOC_010979
TCONS_00021463 mRNA upstream 2274 43028547 ~ 43041355 (-) True XLOC_010979
TCONS_00021464 mRNA upstream 21699 43047972 ~ 43065164 (-) True XLOC_010980
TCONS_00021465 mRNA upstream 99979 43126252 ~ 43139251 (-) False XLOC_010982
TCONS_00021446 other downstream 119907 42888197 ~ 42894510 (-) True XLOC_010971
TCONS_00021444 other downstream 139708 42873740 ~ 42874709 (-) True XLOC_010970
TCONS_00021443 other downstream 141845 42869054 ~ 42872572 (-) True XLOC_010969
TCONS_00021435 other downstream 640237 42321927 ~ 42374180 (-) False XLOC_010965
TCONS_00021429 other downstream 828352 42177692 ~ 42186065 (-) True XLOC_010962
TCONS_00021462 other upstream 1810 43028083 ~ 43035291 (-) False XLOC_010979
TCONS_00021472 other upstream 391359 43417632 ~ 43631241 (-) False XLOC_010988
TCONS_00021473 other upstream 529191 43555464 ~ 43555579 (-) True XLOC_010989
TCONS_00021499 other upstream 1847271 44873544 ~ 44877319 (-) True XLOC_011000
TCONS_00021503 other upstream 1992151 45018424 ~ 45018540 (-) True XLOC_011005

Expression Profile

//