RNA id: TCONS_00021429


Basic Information

Item Value
RNA id TCONS_00021429
length 456
RNA type processed_transcript
GC content 0.40
exon number 2
gene id XLOC_010962
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42177659 ~ 42186093 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTAGACCGGAGGAAAAGCGGGTCTGAGTTAACGCCAGCTATTCGTACAGTTAAAACAACCgcacaaaataagataaaatgaGACCAGACCACCACCCAAGGGGAAGAAATAAGGATTTATTGTGAAAACTTTCATCTCTTGTTCGCATCCTTCTTCGCTCCTGAAATTCTTGCTTCAGCCACTAGATGGACCCACAGTTTGCAGATGACAAAAGACTGATATAACTGAACCATTTTCCTGCATCCATTGGGACGGGAGTGCATCCCGCTGCAATATATTCTTTATGGAGAGTAACACAGCTCCcgggtttttctgttttgttttttctttgtatGATTATCCTCTGTGTAATATACAGTACCGAGAGATGAATTTTGAGTTTTGCTTGTCAGAATTATTGGAATCTCGATTAACTAGATCAACAGTTTTCAGAAGCATACCTTTGTTattgtttc

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0000494 box C/D snoRNA 3'-end processing biological_process
GO:1990258 histone glutamine methylation biological_process
GO:0031167 rRNA methylation biological_process
GO:0022008 neurogenesis biological_process
GO:0032040 small-subunit processome cellular_component
GO:0015030 Cajal body cellular_component
GO:0031428 box C/D snoRNP complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:1990259 histone-glutamine methyltransferase activity molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040426-1936 Predicted to enable RNA binding activity; histone-glutamine methyltransferase activity; and rRNA methyltransferase activity. Acts upstream of or within neurogenesis. Located in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; musculature system; and nervous system. Orthologous to several human genes including FBL (fibrillarin).

Ensembl:

ensembl_id ENSDART00000138506

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021402 lncRNA downstream 439694 41722980 ~ 41737998 (-) False XLOC_010944
TCONS_00021832 lncRNA downstream 439765 41726666 ~ 41737927 (-) True XLOC_010944
TCONS_00021400 lncRNA downstream 439868 41712634 ~ 41737824 (-) False XLOC_010944
TCONS_00021401 lncRNA downstream 439962 41723048 ~ 41737730 (-) False XLOC_010944
TCONS_00021398 lncRNA downstream 478424 41689097 ~ 41699268 (-) False XLOC_010944
TCONS_00021833 lncRNA upstream 787020 42973085 ~ 42974540 (-) True XLOC_010975
TCONS_00021450 lncRNA upstream 788482 42974547 ~ 42993864 (-) False XLOC_010976
TCONS_00022227 lncRNA upstream 788482 42974547 ~ 42993892 (-) True XLOC_010976
TCONS_00021453 lncRNA upstream 817088 43003153 ~ 43011427 (-) False XLOC_010977
TCONS_00021459 lncRNA upstream 836515 43022580 ~ 43025887 (-) True XLOC_010978
TCONS_00021427 mRNA downstream 2075 42156064 ~ 42175617 (-) True XLOC_010961
TCONS_00021424 mRNA downstream 25547 42071696 ~ 42152145 (-) False XLOC_010960
TCONS_00021425 mRNA downstream 25783 42071699 ~ 42151909 (-) False XLOC_010960
TCONS_00021423 mRNA downstream 111075 42057998 ~ 42066617 (-) True XLOC_010959
TCONS_00021422 mRNA downstream 111169 42057918 ~ 42066523 (-) False XLOC_010959
TCONS_00021430 mRNA upstream 7098 42193163 ~ 42238120 (-) True XLOC_010963
TCONS_00021431 mRNA upstream 103011 42289076 ~ 42306597 (-) False XLOC_010964
TCONS_00021432 mRNA upstream 103401 42289466 ~ 42303856 (-) True XLOC_010964
TCONS_00021434 mRNA upstream 133373 42319438 ~ 42390640 (-) False XLOC_010965
TCONS_00021433 mRNA upstream 133373 42319438 ~ 42390640 (-) False XLOC_010965
TCONS_00021426 other downstream 96619 42073336 ~ 42081073 (-) True XLOC_010960
TCONS_00021416 other downstream 212383 41955855 ~ 41965309 (-) True XLOC_010954
TCONS_00021414 other downstream 216498 41936838 ~ 41961194 (-) True XLOC_010952
TCONS_00021415 other downstream 228576 41948075 ~ 41949116 (-) True XLOC_010953
TCONS_00021411 other downstream 295132 41882445 ~ 41882560 (-) True XLOC_010951
TCONS_00021435 other upstream 135862 42321927 ~ 42374180 (-) False XLOC_010965
TCONS_00021443 other upstream 682989 42869054 ~ 42872572 (-) True XLOC_010969
TCONS_00021444 other upstream 687675 42873740 ~ 42874709 (-) True XLOC_010970
TCONS_00021446 other upstream 702132 42888197 ~ 42894510 (-) True XLOC_010971
TCONS_00021462 other upstream 842018 43028083 ~ 43035291 (-) False XLOC_010979