XLOC_010985 (atad2)


Basic Information

Item Value
gene id XLOC_010985
gene name atad2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43319342 ~ 43344859 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021469
ATGGTGATGTTGCGCAGTAACGGTGATATGGACTCGAGCTCGGAGTTTCTGTCCCTGAACCCGCCTAAGCGAAAGTCCGCGCGGCTGAAAAAGGCCAATGATGACAGTTTAACTAGCGCCGAGGACAGTCCAGCAAATGAGGAAAACAGCATGAGGAGCAGAGCTCAGAGAGGAAGACACGTTGCTTTTGCTGatatgaatggacaaaccagcaaatCACCTCCAAAAGAAGAGAAAAGTGGGAAGCATTTAAGGAAGTCTCCAAGACTTCAGGCAGATGGGGAGAGATCGGCAGATGAGCACACAGACGAGGTGGACTCAACTCCCACATCACGAAATCTGCGTGCTCGGATCCAAAGGCGAGGAGAAGACGACAGTGCTGTGAGGCGTAGTTCCAGAATAACAAGATATAAGCTTGACACCAGGAAGCAGTCCGTCCTCTATGACAGACTTATCACAAATACTGCAGAGGCTGTTCTTCAGAAGATGGATGACATGCAGAAGATGCGTCGTAGACTGAGGAGCAGAGACAGTGAGGAGGAGaAATTGAGAATTTACTCTGGAACAAAGAGAACGAGGATAACAAAACCATCCGTAAGAGGACAAGAGGAGAGTTCAGACAACCAGGAGAATGAATACAGTGATCaagatgaggaggaggaagaggaggaggatggTGAAGGTGAGGAAGAGGAGAATGATGAGGGAGATGcagatgaagatgaggatgaagatgaagaggACAATGGAAAGCGCTATGATTTTAGACAAAGAAAAGCTGTTGTGCGTTACCAGGCACCTCTTGAGGaGCCAAAAAAGCAGAGCATATTTTTTAAACGTCACTCCACCCCACTAAGACGCAGTTATCCATTCAGCTCCTCAAGTCCCAGGAGACCATACAACAACAGGAGGAGCACAAGGAGAAGACATGCCATTCACAGTAGTGACTCTACCTCATCCTCTTCTTCTGATGAAGAGAAATTTGAGAGACGAAGAACTAAGAGTCGTAATAGGTCAATAAACAGATGCCTCCCTATGAATTTACGAAAGGACGATCTGTTAGGAATCCACAAGGACAGGATTAAAATCGGAGCAAGTCTTGCAGATGTTGACCCAATGCAGATTGACCAAACAGTGCGCTTCGACAGCATTGGGGGTTTGGGAAAACACATCTCTGCACTGAAGGAAATGGTTGTGTTTCCTTTACTCTACCCAGAAGTCTTTGAGAAATTTAAGATTCAGCCTCCAAGAGGATGTCTGTTCTATGGCCCTCCTGGCACAGGAAAGACTCTTGTCGCTCGAGCCCTAGCCAACGAGTGCAGTCAAGGCGAGAGAAAGGTGGCTTTCTTTATGAGGAAAGGGGCAGACTGTCTGAGCAAATGGGTGGGCGAGTCTGAGAGACAGCTCCGTCTCCTGTTTGACCAGgCATACCAGATGCGTCCATCAATTATTTTCTTTGATGAGATTGATGGTATTGCACCTGTTCGGTCTAGCCGGCAAGACCAGATACACAGCTCCATCGTGTCCACTTTGCTGGCTCTCATGGATGGGCTGGACAGCCGTGGTGAAGTGGTAGTTATTGGTGCCACTAATCGCCTGGACTCCATCGATCCTGCGCTCAGACGACCTGGACGATTTGACAGGGAGTTTCTCTTCAACCTTCCAGACAGAGAGGCtcgcaaagatattttgaagatccATACCAGGCACTGGGACCCGCAGCTGTCTGATGCGTTTCTTGAAGAGTTGGCAGATAAGTGTGTCGGATATTGTGGTACAGATATCAAAGCTGTGTGTGCAGAAGCAGCTCTGTGTGCCCTCCGCAGACGTTACCCCCAGATCTATGCTTCCTCCCAGAAGCTTCTGCTAGATGTGGAGTCCATCTGTGTGAGTGGCCGGGACTTCCTCTCAGCCATGAGGAAGATCGTTCCAGCTTCTCAGAGGGCAGTGGTCTCTCCAGCAAAAGCACTTACACCTGTTATTGAACCTCTGCTGAGCGCTGCCCTCAACAACGCCATGAAGATGCTGCAGAGACTCTTTCCTCATGTAGAGCAGGGACTCAAGAAGAAAAGAGACACTGGAAATGTGTCCGGCATCTTGGATGACCTGCTACAGAGTGAGGATGAGGGATCCTCTGTGTGCATTACTAATAAAGGCCAGAAGAACACTGGACCTGCTGTGTCTGTCCTTCATCTGACCAGGAGTGCTCTGCAACAGCCCACCTCGTTCAGACCAAGACTGCTGCTCTGTGGGACTTCAGGCTCTGCTCAAACCTCTCACTTGGCTCCCGCTATTCTTCACACTCTGGAGAAGTTCACTGTTTACACTCTTGACGTTGCTGTGTTGTATGGAGTCAGTTCAGCCACCCCAGAGGAAGCTTGTGCCCAGGTTTTCTGTGAGGCGAGGAGAACCGCACCCAGCATTGTGTATATCCCACACATCCAGCGCTGGTGGGACACTGTGAGCCCCACTTTAAGAGCTACATTCATCAGTCTGCTGCAGGACATTCCATCATTCTGCCCCTGCCTCCTCCTCGCTACATGCAGCTTTCCTCATGATGCACTCTATACTGAGgTGCAGGATCTCTTCCATGTTGAGTATGGTGAAGTGTTTGATGTTCCACTTCCTTCACGGGATGAGAGGCTCAGATTCTTCGAGGATCTTATTTTGAATCAAGCTGCTAAAGCACCGGCATCTAAAAGAGAAGCAGTCCTCCAGGCACTAGAGGTGTTACCAGTGGCTCCTCCGCCTCCTCCCCGCCTGCTCACTAAGCAGGAGCTGCAGAAGCTGGAAGAGCAGGAAGAGGACACCCTCCGGGAGCTCCGTCTCTTTCTGCGAGATGTCACTAACCGACTGGCTCAAGACAAGCGCTTTAAGGCCTTTACTAAGCCTGTGGACACTGAGGAGGTTCCCGATTACACTACAGTCATCAAACAGCCCATGGACTTGTCCACAGTTCTCAGCAAAATTGATCTGCATAAGTATGAAACTGTGGCAGCTTATTTGGAAGATGTGGATCTGATTTGGCAGAACGCCCTCGAGTACAACCCAGACAGAGATCCTTCAGATCGGCTCATCAGACACCGTGCCTGTGCTCTCAAGGACACTGTGCATGCCATAATCCGAGATGAATTAGATGAAGACTTTGAGAAGATCTGCGTTGAGATGAAGGAGTCTCGAAGCAAGCGAGGCTCTAGCTCCTCACGCTTCACTCCTGCCTACTACCATGTGCTGCCAAAGGTTTCTGCTACAGCGGAGCAGAAGACGAGTGATCCGACACCCAGTAAAGAAGCTACACCTCTGTCAGCACAAGCTGTGATTTCACCACGTCAAGCAGGAATTAATACAGCTTCCCAGAtgaaaaagaagaggaaaaacCGCTGGAAAAATGGCTTCATCAGCAAAAAGAAGTGCTCACATGTGAACTCTAAAGACAACTCTAACATTGCAGAATCAGGGgatgaagaggaggatgaagacGAAGATGGAAAACCAGCCGAGAGTGAAGATCTGGAAAAGATGAGGGATGCTGAATGCGAGACAATGGAGGTTGAAGGGCCCACCACATCCACCTCCGTAGTGCAGAAGATCACCTTCGTTAGTGAGGAACAGGAAGACAATACTGCCGCTGCAGTGAACGAGGTCGTGAATGTTGAGAATGTCCAGATTAATGCTAGCGGTGAGCAAAATGATGTGCAACCATTAGATAACAACGAACCTAAGAGAACAGAGCCAGGTGCAGAGGATGACACAGAAATGGAGTTCAGACCGAGGCGGTTGACGAGAGGTTTTAAGAGTCAGGCTGAGCAGCAAAGTCTCATCAGTGTGGATGCTGCCATGAAGATCCTGGAGCAGAAGAACGTGCCTCTAATTGTTGACCATAACAAACTCAAAGAACTTCTGCAGAAAGTTGTGGACATGACAGAGGGATATGAGGTCAATCAATTGGAGAAACTTTATGCTCTGCTGTGCCAGAGTATATACAGACACAGGAAGGATTACGACAAGACTGCACTTATACAGGCATGTTTAGATGCAAAAGCActaggggtgtaa
>TCONS_00021470
ATGGCAGAAAGAGGGTACAGTTTCTCTCTCACCACTTTCAGCCCTTCTGGGAAGTTGGTCCAGATTGAATATGCTCTGGCAGCTGTAGCTGCTGGTGCTCCTTCAGTTGGAATTAAAGCTTCAAATGGTGTTGTTCTGGCCACAGAAAAGAAGCAGAAATCTATACTGTATGATGAGCAGAGTGTGCACAAAGTAGAGCCCATAACCAAACACATCGGTATGGTCTACAGCGGCATGGGTCCAGACTACAGGGTTCTTGTGCGAAGGGCACGAAAGCTGGCTCAGCAGTACTTCTTGGTCTATCAGGAGCCAATTCCTACAGGCCAGCTTGTTCAGAGAGTGGCCTCTGTCATGCAAGAGTACACACAATCAGGAGGAGTTCGGCCGTTTGGGGTGTCACTCCTGATTGCTGGCTGGGATGAAGATCGCCCGTACCTTTTCCAGTCTGACCCATCGGGAGCGTACTTTGCATGGAAAGCCACAGCGATGGGGAAGAACTATGTCAATGGGAAAACATTCCTTGAAAAAAGATACAATGAGGACCTGGAACTGGAAGATGCAATTCACACTGCTATTCTGACTCTTAAGGAAAGCTTTGAAGGTCAGATGACTGAGGACAACATCGAGGTGGGAATCTGCAATGAAGCGGGGTTTAGACGACTGACCCCGGCAGAAGTGAAAGATTATCTAGCTGCCATTGCTTAAAGTCAACCTCCTGACAAGATGCTGAGCACTGACTATCTAATGTCTTCATTGCTACAACTTCATTAGTATGAGTTTGAGCTATGTTAACGAATGGAAACAAGTGAAAgttgtattgtttatattttgcttttctttcttactgaaggagaaaataaaagaaaaggtcTTTTGAAATGCTGTTGACTGCTTTATCTGTTGGTGTTCGTTATACGTGagcaaattacataaaataactaAATGTGTAGCTAATTCTTATTTTTATCTGATCATTCATATCGGAAATGAAGGTTGCAATATATATGGCGCCAAATATCTTGTTTCAGTGCCCGGGTGTTCATAAACAAGCTCACGAGGAGGTTTGGCCtgagtcagccaatcagaatccagagCACCGCGTCACTGCTGGAGCGCCAAAAAATAAGCTGGTACACCTTTCCACTAGTATATTCCTACGCAAAACAAACGTATTTTGGCACAGATTAAATCCTCGCCGCTTTTTTTGTCAGTGATATGTCAAGACATTTTCcttcaatgtttattttaatgtctcTAATTTGAATAACACATTTgttatcaaaataaaagatttgttaTTGTGGTCATTTGGTGTAACGGCTCTAGTTTCTCTCTCGCATGTACATCCTTGTTTTGTGTCGTGTCATTCGAGTGTAAGTGACGTTTGTGGCGCCAGAAATCAAGGAGGAGCGGTGTGCGTTTTCAAAACGATGCGTTATCATTCAACGTACTCGCCGTATTAAAATCTTAACAAACAAGTTTTAAGCTAAGTTTGACAGCGAATGCTTTTAGGGTCTTTTAAGGCTCATTAAAGATGGTGATGTTGCGCAGTAACGGTGATATGGACTCGAGCTCGGAGTTTCTGTCCCTGAACCCGCCTAAGCGAAAGTCCGCGCGGCTGAAAAAGGCCAATGATGACAGTTTAACTAGCGCCGAGGACAGTCCAGCAAATGTGAGTTAATAACTATTCTTTGCAACTTCTAACGTGTTAAGCAATTTATTGTTGACATACTGTGTGAAACGCCCACGTTAG

Function

symbol description
atad2 Predicted to enable ATP hydrolysis activity; chromatin binding activity; and histone binding activity. Predicted to be involved in negative regulation of chromatin silencing and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human ATAD2 (ATPase family AAA domain containing 2).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031936 negative regulation of chromatin silencing biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-479 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome core complex, alpha-subunit complex. Orthologous to human PSMA2 (proteasome 20S subunit alpha 2).
ZDB-GENE-030131-7003 Predicted to enable ATP hydrolysis activity; chromatin binding activity; and histone binding activity. Predicted to be involved in negative regulation of chromatin silencing and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human ATAD2 (ATPase family AAA domain containing 2).

Ensembl:

ensembl_id ENSDARG00000040121 ENSDARG00000076590

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021469 False 4056 mRNA 0.49 27 43319342 43335914
TCONS_00021470 True 1753 mRNA 0.43 8 43335696 43344859

Neighbor

gene id symbol gene type direction distance location
XLOC_010984 washc5 coding downstream 1415 43291709 ~ 43317927 (-)
XLOC_010983 cldn12 coding downstream 85833 43227724 ~ 43233509 (-)
XLOC_010982 slc25a40 coding downstream 180085 43126252 ~ 43139257 (-)
XLOC_010981 NA coding downstream 195115 43119113 ~ 43124227 (-)
XLOC_010980 sema4aa coding downstream 254178 43047972 ~ 43065164 (-)
XLOC_010986 FO704821.1 coding upstream 8247 43353106 ~ 43356018 (-)
XLOC_010987 NA coding upstream 14066 43358925 ~ 43368871 (-)
XLOC_010988 oxr1a coding upstream 72773 43417632 ~ 43742343 (-)
XLOC_010989 LO018541.1 coding upstream 210605 43555464 ~ 43555579 (-)
XLOC_010990 LO017721.1 coding upstream 334408 43679267 ~ 43679611 (-)
XLOC_010626 CR392024.2 misc downstream 22424167 20895112 ~ 20895175 (-)
XLOC_010976 NA non-coding downstream 325450 42974547 ~ 42993892 (-)
XLOC_010975 NA non-coding downstream 344802 42973085 ~ 42974540 (-)
XLOC_010970 CR854827.1 non-coding downstream 444633 42873740 ~ 42874709 (-)
XLOC_010954 BX649388.1 non-coding downstream 1354033 41955855 ~ 41965309 (-)
XLOC_010992 NA non-coding upstream 809625 44154484 ~ 44159865 (-)
XLOC_010993 NA non-coding upstream 835916 44180775 ~ 44295549 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_02991231_02994560 PSMA2 coding CI01000027 null 2991231 ~ 2994717 (+)