CI01000027_02991231_02994560 (PSMA2)


Basic Information

Item Value
gene id CI01000027_02991231_02994560
gene name PSMA2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2991231 ~ 2994717 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_02991231_02994560.mRNA
ATGGCAGACAGAGGGTACAGTTTCTCCCTCACCACTTTCAGCCCTTCAGGAAAGTTGGTCCAGATTGAATATGCTCTGGCAGCTGTAGCGGCTGGTGCTCCTTCGGTTGGAATAAAAGCTTCAAACGGTGTTGTTCTGGCTACGGAAAAGAAGCAGAAATCTATACTGTATGATGAGCAAAGTGTTCACAAAGTAGAGCCCATAACCAAACACATCGGTATGGTCTACAGTGGCATGGGTCCAGACTACAGAGGAGTTCGGCCATTTGGTGTGTCGCTTCTGATTGCTGGCTGGGATGAAGATCGCCCATACCTTTTCCAGTCTGACCCCTCGGGAGCATACTTTGCATGGAAAGCCACAGCGATGGGGAAGAACTATGTGAATGGGAAAACATTCCTTGAAAAAAGATACAACGAGGATCTGGAACTGGAAGATGCGATTCACACTGCTATTCTGACTCTTAAGGAAAGCTTTGAAGGTCAAATGACTGAAGACAACATTGAGGTGGGAATCTGCAATGAAGCAGGATTTAGGCGACTGACCCCGGCGGAGGTGAAAGACTACCTAGCTGCCATTGCTTAAAATCACTTTTACAAGTTGTAGATTGAGCACTGATTATCTTGTCTTCATCAGTACAACTTCATTAGTACTTATTCATGAGTTTGAGCAATGTGAAGCATGGAAATAAGTGAAAGTTGTAGTGTTTATACTTTGCTTTCTTTCTTACTGAAGGAAAAAA

Function

symbol description
psma2 Involved in response to virus. Located in extracellular exosome and nucleus. Part of proteasome complex.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K02726 PSMA2; 20S proteasome subunit alpha 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_02991231_02994560.mRNA True 739 mRNA 0.44 7 2991231 2994717

Neighbor

gene id symbol gene type direction distance location
CI01000027_02981155_02982628 NA coding upstream 8346 2981011 ~ 2982885 (+)
CI01000027_02941870_02946290 OXR1 coding upstream 43334 2941870 ~ 2948777 (+)
CI01000027_02895512_02924151 NA coding upstream 67034 2895512 ~ 2924197 (+)
CI01000027_02611537_02740618 ZFPM2, ZFPM2A coding upstream 250613 2611537 ~ 2740618 (+)
CI01000027_02530086_02589227 NA coding upstream 401755 2529638 ~ 2589476 (+)
CI01000027_02995394_03005981 ATAD2 coding downstream 677 2995394 ~ 3005997 (+)
CI01000027_03008262_03011156 NA coding downstream 13545 3008262 ~ 3011995 (+)
CI01000027_03014464_03027710 E430025E21RIK, STRUMPELLIN, KIAA0196 coding downstream 19139 3013856 ~ 3027862 (+)
CI01000027_03110196_03113083 NA coding downstream 114490 3109207 ~ 3113409 (+)
CI01000027_03142352_03156415 NA coding downstream 147393 3142110 ~ 3157077 (+)
G138817 NA non-coding upstream 2298 2988688 ~ 2988933 (+)
G138802 NA non-coding upstream 20423 2963817 ~ 2970808 (+)
G138775 NA non-coding upstream 257936 2732818 ~ 2733295 (+)
G138687 NA non-coding upstream 268872 2716814 ~ 2722359 (+)
G138828 NA non-coding downstream 121653 3116370 ~ 3116659 (+)
G138830 NA non-coding downstream 127574 3122291 ~ 3122705 (+)
G138831 NA non-coding downstream 128157 3122874 ~ 3123166 (+)
G138832 NA non-coding downstream 130080 3124797 ~ 3125029 (+)
G138833 NA non-coding downstream 130732 3125449 ~ 3125675 (+)
G138515 NA other upstream 1314371 1664408 ~ 1676860 (+)
G138436 NA other upstream 1483415 1506961 ~ 1507816 (+)
G138290 NA other upstream 1992050 995970 ~ 999181 (+)
G138247 NA other upstream 2121656 855388 ~ 893121 (+)
G138238 NA other upstream 2159548 829774 ~ 831683 (+)
G138915 NA other downstream 489670 3484387 ~ 3486647 (+)
G138953 NA other downstream 507355 3502072 ~ 3520065 (+)
G140436 NA other downstream 1742681 4737398 ~ 4774262 (+)
G140440 NA other downstream 1785700 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 2054206 5050310 ~ 5055755 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010985 atad2 coding NC_007127.7 CM002900.2 43319342 ~ 43344859 (-)