CI01000027_02611537_02740618 (ZFPM2, ZFPM2A)


Basic Information

Item Value
gene id CI01000027_02611537_02740618
gene name ZFPM2, ZFPM2A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2611537 ~ 2740618 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_02611537_02740618.mRNA
CCACTAGATGGAGGTCTGGAAGAGGAAGAGGAGGAGTGCATATCAGATGCAAATGAGCTCACTGCTAAAGAGGAGTTTTCAGTGGAGGAAAACTTTCCTGCTGACTTTGAGCCAGACAACCTCACCTGTGAGGACATGGAATACTTCTGCGGCAAAGGGGAAGAGAATGGCAACAGAGAAATAGGAGAGTCAGAGATGGAAACAGAGAGTGAGAAGACCAGACACCCCCCTCTGGAGCCGGAGGAATGGGACGGTCCACGAGAACTGGACCTGTTCAACAAAGACGGAGAACGTCGGATTCACAGCCGGCAGCAGCTTCCTGTAGGAACCACGTGGGGGCCTTTCGAGGGGAAAATTGAGCTAAACACAGATGCTCAGAAGACAAAGCCGCACGTCCCACTGGTGCTGAACGCAGGCCCCAGGTGGCTGCTGGATGTGACTTGGCAGGGAGCAGACGACAACAAGAACAACTGTGTGGTTTACAGCAAAGGTGGTCAGTTGTGGTGCACCACGACCAAGAACATGATGGAAGGCGAGGAGCTGGTGGCATTCGCAGTGGACTTTGACTCTCGATTGCAGGCGGTCAATCACATGTCTCTCGGTGAGGGCATGTACCCAGCACGCCTCCTGGACACCATCCAGCTCCTGCCCCAGCAAGCTGCCATGGCCTCCATATTACCTACAGCTATAGTCAACAAGGACATCTTCCCCTGTAAAGCATGTGGGATATGGTACAGGAGTGAGAGGAACCTTCAGGCCCACCTGATGTATTACTGCAGCGGGCGGCAGAGGGAACCCGATAATGTCCCCGAAGAGACTGACGCCAATTCCCACCAAACTCCCAGTATCTGCCCTTTCCCACAATGCAACAAGAGCTTCAGCAACCCTCGTGCTCTGGAGATGCACTTGAGCTCACATAGTGTCAAAATGGAGGAGTCTCTTCCCCCTGGCACCAGCTTGAAATGCACAATCTGCAACTTCACAGCAGATTCACTCCTTACATTCCAGCACCACATCCTTTCACACCTGTCACAGGCAGCCTTCAGATGTCATCACTGCCACATCAGCTTCCAGAACCATAGGGAACTCCTGCAGCATCAAGACTTACACGGACACTCTGGGAAGATTCACAGGGAGAGCGACAGCGAAAACTCCCCAAGAGGAGGAGAGGAAAGTCTGCAGGCGGCACGAGCAGAAGTGTCAGGCAGGAAGGATGTAGTCATGCAAAGTCCCAAAAGCACACCCAACAAGGCCAACAGTCCTGATGGGGAACTTGAAAGACCTGAGAAAAAACCTACCCTCGGACTGCAGAAGGGGGAAAGTCACCCAGGCAGCAAGGCTAGTTTTTCTTACACCAGAATCAAGTCGGAACCCTCTAGTCCACGGCTAGCCTCCTCTCCTGTCCAGCACAACATGGGCCCAACCTTTCCCATGGGTCCATTTTTGTCACAGTTTGCATTCTCCCAGGACATTTCTGTGGTACCACAAGCATCTGAAATTCTAGCAAAAATGTCAGAACTTGTGCATCGCAGGCTACGCCATGGAGGGAACAGCTACCCTCCTGTCATCTACAGTCCTCTAATGCCCAAAGGAGCGACCTGCTTTGAATGCAACATCACCTTCAATAATCTAGATAACTACTTAGTTCATAAGAAGCACTACTGCAACAGTCGCTGGCAGCACATGGCAAAGTCCCCAGATTTCTCTAGTGTTCCGGACAAGGTTTCCGATGCCATAAGTCCAAACAGTGGCCACACTTCAGTCGGTATGCTCCCCGGATGCCTTCCATCAGAGACTGACAGTCATCTCGTGACAACAGCTTGCTTGAATTCGTCTGTTTTGGATATTATGAATGCTAGTGGGAAAGTGCCTGAAAAAGACCTCACTGGGCAAGTAAAGAAGGTTACTACACCAACAGGAGTTGAGGAAAGGCTTGGTGGAAAACAGCCTGAGGTGAAGAGTCCCAGCACATCTTTGGTGGAAAGTGACAACGACCCAAACAAGACTACCTGTGAAGCATGCAACATCACCTTCAGCCGGCATGAAACGTACATGGTTCACAAGCAGTACTATTGCGCCACTCGCCACGACCCACCCATGAAACGCATGTCTGCGAAGGTGCCTGCCATGCAGCGGACCATGAGAACGCGCAAGCGGAGGAAGATGTATGAGATGTGTCTACCTGACCAAGAGCAACGGCAGCCCATGGGGCCACAGCCGGGATTCTTGGGTTTGCCTACTCTTGGAAATCCCTGTACATCCCAGGAGACGGTTGAAAGTCTAGCCGACCGCTTCCATCCACGGTGTGACATTTTTCCAGGCCTTGTCCCGAAACACTTAGATGCTTCTCTTACCGTCTCCAAGCCCATCCTTGCCCCCAAAGGTAACACTATTGCAGACCCACAGGAACTAGATGCTCCAATAGATCTCAGCAAAAAGTGCTCACCCCTTCCTGACAAGTCGAGCAACTCCCCTAAAAGACTTCTGGACTATCACGAATGTACCGTCTGCAAGATAAGTTTTAACAAAGTGGAGAATTACCTAGCACATAAACAGAACTTTTGCCCTGTCACAGCTGCTCAGCACGGTGAGATCTGCAATCTGGAGCAGCCGATGTTCCAGGGCATTAAGAGCGAAGGCAATAATTCGGATGACATCTATGACAAGAGTTCTGTGAAATGCGAGAAAAACGGTGGTAACAAGTTGATGGTGCAAAACGGAGGTATATTCCCACCACACCTTGGGCCGACACCGGATCTGAAAGCTTTCAGTGATGCACAGCTCATGACCTCGAAAGATGAGAACAAGAACATGTTTTTGCCTCACTGTCTCTATCCTGGAGCAATAAAGAAGGTGAAAGGTACAGAGCAAATTTCGCCATATTTTGGGATAAAGAGCGGCGACTACATGGCAGGGAGTCTCGCAATGCAGGGTGAGGCAGCCGAACAGGAGCAAAACAGCAATGGCGCTGGAGAGACGGGAACAGAACCACCTGCGGCCAATGGTTGTCCCCATCCGAGCAAGGAGCCGCTGCCACTGCTGCCCAAAAACAGGGGCATGGTGATTGTCAACGGTGGTCATAAAGAGGATCGCCAGACACCAGCAACTCCGCAGCAAGAGAATCAGCCTCACAACGCCTCAACACCAGAGGAACAAACATCTCCCACGTGGGGAGCCGAGAACCCTCCCGACCCAAACGAGAATGTATCACCCACTTCTAAATCGCCCATGGAGGAATCCGCACCTGCCGGAAAAGGCATAAATGGGTCAGCGCCGCCAGCAGGCAGTGGGAAGTACTGCCGCCTCTGTGACATCCAGTTCAATAACTTGTCAAACTTTATCACTCACAAGAAGTTTTACTGCTCGTCACATGCCGCTGAGCATGTGAAA

Function

symbol description
zfpm2a Predicted to enable DNA binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and metal ion binding activity. Predicted to be involved in cell differentiation; heart development; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in midbrain. Human ortholog(s) of this gene implicated in 46,XY sex reversal 9; myelodysplastic syndrome; and tetralogy of Fallot. Orthologous to human ZFPM2 (zinc finger protein, FOG family member 2).
zfpm2 Enables transcription coactivator activity and transcription corepressor activity. Involved in cardiac chamber morphogenesis; negative regulation of fat cell differentiation; and regulation of transcription by RNA polymerase II. Located in nucleoplasm. Implicated in 46,XY sex reversal 9; myelodysplastic syndrome; and tetralogy of Fallot.

GO:

id name namespace
GO:0001085 RNA polymerase II transcription factor binding molecular_function

KEGG:

id description
K17442 ZFPM2, FOG2; zinc finger protein ZFPM2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_02611537_02740618.mRNA False 3390 mRNA 0.51 7 2611537 2740618

Neighbor

gene id symbol gene type direction distance location
CI01000027_02530086_02589227 NA coding upstream 22061 2529638 ~ 2589476 (+)
CI01000027_02492454_02508459 NA coding upstream 102935 2492077 ~ 2508602 (+)
CI01000027_02455787_02458435 DCSTAMP coding upstream 152493 2455153 ~ 2459044 (+)
CI01000027_02429134_02451902 RIMS2A, RIMS2 coding upstream 159002 2427563 ~ 2452535 (+)
CI01000027_02419674_02422700 NA coding upstream 188409 2419633 ~ 2423128 (+)
CI01000027_02895512_02924151 NA coding downstream 154894 2895512 ~ 2924197 (+)
CI01000027_02941870_02946290 OXR1 coding downstream 201252 2941870 ~ 2948777 (+)
CI01000027_02981155_02982628 NA coding downstream 240393 2981011 ~ 2982885 (+)
CI01000027_02991231_02994560 PSMA2 coding downstream 250613 2991231 ~ 2994717 (+)
CI01000027_02995394_03005981 ATAD2 coding downstream 254776 2995394 ~ 3005997 (+)
G138761 NA non-coding upstream 2077 2609167 ~ 2609460 (+)
G138760 NA non-coding upstream 2888 2608426 ~ 2608649 (+)
G138759 NA non-coding upstream 3898 2607409 ~ 2607639 (+)
G138758 NA non-coding upstream 4825 2606512 ~ 2606712 (+)
G138757 NA non-coding upstream 5047 2606267 ~ 2606490 (+)
G138802 NA non-coding downstream 223199 2963817 ~ 2970808 (+)
G138817 NA non-coding downstream 248070 2988688 ~ 2988933 (+)
G138828 NA non-coding downstream 375752 3116370 ~ 3116659 (+)
G138830 NA non-coding downstream 381673 3122291 ~ 3122705 (+)
G138515 NA other upstream 934677 1664408 ~ 1676860 (+)
G138436 NA other upstream 1103721 1506961 ~ 1507816 (+)
G138290 NA other upstream 1612356 995970 ~ 999181 (+)
G138247 NA other upstream 1741962 855388 ~ 893121 (+)
G138238 NA other upstream 1779854 829774 ~ 831683 (+)
G138915 NA other downstream 743769 3484387 ~ 3486647 (+)
G138953 NA other downstream 761454 3502072 ~ 3520065 (+)
G140436 NA other downstream 1996780 4737398 ~ 4774262 (+)
G140440 NA other downstream 2039799 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 2308305 5050310 ~ 5055755 (+)
G138771 NA non-coding upstream 7523 2621370 ~ 2621593 (+)
G138770 NA non-coding upstream 9390 2619518 ~ 2619726 (+)
G138768 NA non-coding upstream 10678 2618184 ~ 2618438 (+)
G138767 NA non-coding upstream 11337 2617534 ~ 2617779 (+)
G138766 NA non-coding upstream 12817 2616003 ~ 2616299 (+)
G138655 NA non-coding downstream 12793 2683919 ~ 2694005 (+)
G138658 NA non-coding downstream 24949 2696075 ~ 2703225 (+)
G138661 NA non-coding downstream 32238 2703364 ~ 2716558 (+)
G138687 NA non-coding downstream 45688 2716814 ~ 2722359 (+)
G138775 NA non-coding downstream 61692 2732818 ~ 2733295 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002633 zfpm2 coding CM030136.1 CM030136.1 23677942 ~ 23682594 (-)