RNA id: CI01000027_02611537_02740618.mRNA


Basic Information

Item Value
RNA id CI01000027_02611537_02740618.mRNA
length 3390
RNA type mRNA
GC content 0.51
exon number 7
gene id CI01000027_02611537_02740618
representative False

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2611537 ~ 2740618 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCACTAGATGGAGGTCTGGAAGAGGAAGAGGAGGAGTGCATATCAGATGCAAATGAGCTCACTGCTAAAGAGGAGTTTTCAGTGGAGGAAAACTTTCCTGCTGACTTTGAGCCAGACAACCTCACCTGTGAGGACATGGAATACTTCTGCGGCAAAGGGGAAGAGAATGGCAACAGAGAAATAGGAGAGTCAGAGATGGAAACAGAGAGTGAGAAGACCAGACACCCCCCTCTGGAGCCGGAGGAATGGGACGGTCCACGAGAACTGGACCTGTTCAACAAAGACGGAGAACGTCGGATTCACAGCCGGCAGCAGCTTCCTGTAGGAACCACGTGGGGGCCTTTCGAGGGGAAAATTGAGCTAAACACAGATGCTCAGAAGACAAAGCCGCACGTCCCACTGGTGCTGAACGCAGGCCCCAGGTGGCTGCTGGATGTGACTTGGCAGGGAGCAGACGACAACAAGAACAACTGTGTGGTTTACAGCAAAGGTGGTCAGTTGTGGTGCACCACGACCAAGAACATGATGGAAGGCGAGGAGCTGGTGGCATTCGCAGTGGACTTTGACTCTCGATTGCAGGCGGTCAATCACATGTCTCTCGGTGAGGGCATGTACCCAGCACGCCTCCTGGACACCATCCAGCTCCTGCCCCAGCAAGCTGCCATGGCCTCCATATTACCTACAGCTATAGTCAACAAGGACATCTTCCCCTGTAAAGCATGTGGGATATGGTACAGGAGTGAGAGGAACCTTCAGGCCCACCTGATGTATTACTGCAGCGGGCGGCAGAGGGAACCCGATAATGTCCCCGAAGAGACTGACGCCAATTCCCACCAAACTCCCAGTATCTGCCCTTTCCCACAATGCAACAAGAGCTTCAGCAACCCTCGTGCTCTGGAGATGCACTTGAGCTCACATAGTGTCAAAATGGAGGAGTCTCTTCCCCCTGGCACCAGCTTGAAATGCACAATCTGCAACTTCACAGCAGATTCACTCCTTACATTCCAGCACCACATCCTTTCACACCTGTCACAGGCAGCCTTCAGATGTCATCACTGCCACATCAGCTTCCAGAACCATAGGGAACTCCTGCAGCATCAAGACTTACACGGACACTCTGGGAAGATTCACAGGGAGAGCGACAGCGAAAACTCCCCAAGAGGAGGAGAGGAAAGTCTGCAGGCGGCACGAGCAGAAGTGTCAGGCAGGAAGGATGTAGTCATGCAAAGTCCCAAAAGCACACCCAACAAGGCCAACAGTCCTGATGGGGAACTTGAAAGACCTGAGAAAAAACCTACCCTCGGACTGCAGAAGGGGGAAAGTCACCCAGGCAGCAAGGCTAGTTTTTCTTACACCAGAATCAAGTCGGAACCCTCTAGTCCACGGCTAGCCTCCTCTCCTGTCCAGCACAACATGGGCCCAACCTTTCCCATGGGTCCATTTTTGTCACAGTTTGCATTCTCCCAGGACATTTCTGTGGTACCACAAGCATCTGAAATTCTAGCAAAAATGTCAGAACTTGTGCATCGCAGGCTACGCCATGGAGGGAACAGCTACCCTCCTGTCATCTACAGTCCTCTAATGCCCAAAGGAGCGACCTGCTTTGAATGCAACATCACCTTCAATAATCTAGATAACTACTTAGTTCATAAGAAGCACTACTGCAACAGTCGCTGGCAGCACATGGCAAAGTCCCCAGATTTCTCTAGTGTTCCGGACAAGGTTTCCGATGCCATAAGTCCAAACAGTGGCCACACTTCAGTCGGTATGCTCCCCGGATGCCTTCCATCAGAGACTGACAGTCATCTCGTGACAACAGCTTGCTTGAATTCGTCTGTTTTGGATATTATGAATGCTAGTGGGAAAGTGCCTGAAAAAGACCTCACTGGGCAAGTAAAGAAGGTTACTACACCAACAGGAGTTGAGGAAAGGCTTGGTGGAAAACAGCCTGAGGTGAAGAGTCCCAGCACATCTTTGGTGGAAAGTGACAACGACCCAAACAAGACTACCTGTGAAGCATGCAACATCACCTTCAGCCGGCATGAAACGTACATGGTTCACAAGCAGTACTATTGCGCCACTCGCCACGACCCACCCATGAAACGCATGTCTGCGAAGGTGCCTGCCATGCAGCGGACCATGAGAACGCGCAAGCGGAGGAAGATGTATGAGATGTGTCTACCTGACCAAGAGCAACGGCAGCCCATGGGGCCACAGCCGGGATTCTTGGGTTTGCCTACTCTTGGAAATCCCTGTACATCCCAGGAGACGGTTGAAAGTCTAGCCGACCGCTTCCATCCACGGTGTGACATTTTTCCAGGCCTTGTCCCGAAACACTTAGATGCTTCTCTTACCGTCTCCAAGCCCATCCTTGCCCCCAAAGGTAACACTATTGCAGACCCACAGGAACTAGATGCTCCAATAGATCTCAGCAAAAAGTGCTCACCCCTTCCTGACAAGTCGAGCAACTCCCCTAAAAGACTTCTGGACTATCACGAATGTACCGTCTGCAAGATAAGTTTTAACAAAGTGGAGAATTACCTAGCACATAAACAGAACTTTTGCCCTGTCACAGCTGCTCAGCACGGTGAGATCTGCAATCTGGAGCAGCCGATGTTCCAGGGCATTAAGAGCGAAGGCAATAATTCGGATGACATCTATGACAAGAGTTCTGTGAAATGCGAGAAAAACGGTGGTAACAAGTTGATGGTGCAAAACGGAGGTATATTCCCACCACACCTTGGGCCGACACCGGATCTGAAAGCTTTCAGTGATGCACAGCTCATGACCTCGAAAGATGAGAACAAGAACATGTTTTTGCCTCACTGTCTCTATCCTGGAGCAATAAAGAAGGTGAAAGGTACAGAGCAAATTTCGCCATATTTTGGGATAAAGAGCGGCGACTACATGGCAGGGAGTCTCGCAATGCAGGGTGAGGCAGCCGAACAGGAGCAAAACAGCAATGGCGCTGGAGAGACGGGAACAGAACCACCTGCGGCCAATGGTTGTCCCCATCCGAGCAAGGAGCCGCTGCCACTGCTGCCCAAAAACAGGGGCATGGTGATTGTCAACGGTGGTCATAAAGAGGATCGCCAGACACCAGCAACTCCGCAGCAAGAGAATCAGCCTCACAACGCCTCAACACCAGAGGAACAAACATCTCCCACGTGGGGAGCCGAGAACCCTCCCGACCCAAACGAGAATGTATCACCCACTTCTAAATCGCCCATGGAGGAATCCGCACCTGCCGGAAAAGGCATAAATGGGTCAGCGCCGCCAGCAGGCAGTGGGAAGTACTGCCGCCTCTGTGACATCCAGTTCAATAACTTGTCAAACTTTATCACTCACAAGAAGTTTTACTGCTCGTCACATGCCGCTGAGCATGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157663 lncRNA upstream 2077 2609167 ~ 2609460 (+) True G138761
TU157662 lncRNA upstream 2888 2608426 ~ 2608649 (+) True G138760
TU157661 lncRNA upstream 3898 2607409 ~ 2607639 (+) True G138759
TU157660 lncRNA upstream 4825 2606512 ~ 2606712 (+) True G138758
TU157659 lncRNA upstream 5047 2606267 ~ 2606490 (+) True G138757
TU157700 lncRNA downstream 206720 2947338 ~ 2948777 (+) True CI01000027_02941870_02946290
TU157707 lncRNA downstream 223199 2963817 ~ 2970808 (+) True G138802
TU157722 lncRNA downstream 248070 2988688 ~ 2988933 (+) True G138817
TU157734 lncRNA downstream 375752 3116370 ~ 3116659 (+) True G138828
TU157736 lncRNA downstream 381673 3122291 ~ 3122705 (+) True G138830
CI01000027_02530086_02589227.mRNA mRNA upstream 22061 2529638 ~ 2589476 (+) False CI01000027_02530086_02589227
CI01000027_02492454_02508459.mRNA mRNA upstream 102935 2492077 ~ 2508602 (+) True CI01000027_02492454_02508459
CI01000027_02455787_02458435.mRNA mRNA upstream 152493 2455153 ~ 2459044 (+) True CI01000027_02455787_02458435
CI01000027_02429134_02451902.mRNA mRNA upstream 159002 2429006 ~ 2452535 (+) False CI01000027_02429134_02451902
CI01000027_02419674_02422700.mRNA mRNA upstream 188409 2419633 ~ 2423128 (+) True CI01000027_02419674_02422700
CI01000027_02895512_02924151.mRNA mRNA downstream 154894 2895512 ~ 2924197 (+) True CI01000027_02895512_02924151
CI01000027_02941870_02946290.mRNA mRNA downstream 201252 2941870 ~ 2947897 (+) False CI01000027_02941870_02946290
CI01000027_02981155_02982628.mRNA mRNA downstream 240393 2981011 ~ 2982885 (+) True CI01000027_02981155_02982628
CI01000027_02991231_02994560.mRNA mRNA downstream 250613 2991231 ~ 2994717 (+) True CI01000027_02991231_02994560
CI01000027_02995394_03005981.mRNA mRNA downstream 254776 2995394 ~ 3005997 (+) True CI01000027_02995394_03005981
TU157376 other upstream 934677 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 1103721 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 1612356 995970 ~ 999181 (+) True G138290
TU157065 other upstream 1741962 855388 ~ 869575 (+) False G138247
TU157051 other upstream 1779854 829774 ~ 831683 (+) True G138238
TU157841 other downstream 743769 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 761454 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 1996780 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 1996780 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 1996780 4737398 ~ 4774262 (+) True G140436

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021477 False 4564 mRNA 0.47 8 NC_007127.7 43818897 ~ 44127326 (-)
bowfin (Amia calva) AMCG00002633 True 3904 mRNA 0.46 3 CM030136.1 23677942 ~ 23682594 (-)