CI01000027_02941870_02946290 (OXR1)


Basic Information

Item Value
gene id CI01000027_02941870_02946290
gene name OXR1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2941870 ~ 2948777 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_02941870_02946290.mRNA
ATCACAACAAGGGAGGACGTGAACTCCAAACATGGCACGTCCATCACTGCCAGCCTGGAGCCAGAGACTTTCAAGCCCAACCTGAACGAACCCAGTGACCTTCTGGAGGCAGAGAAGATCGAGAAGCTGGCGAAACATCTCCCGCCCAGAACCATCGGTTACCACTGGAATCTGGCCTACAGCACATCTAAACATGGCATGAGCATTAAGTCGCTGTACCGGGCGATGCAGGATCAGGAATCGCCCATGCTGCTGGTCATCAAAGACAGTGACGGACAGATATTTGGGGCTTTGGCCTCAGAACCCTTCAAAGTTAGCGAGGGTTTCTACGGCACAGGAGAGACTTTCCTGTTCACCTTCTATCCGGAGTTTGAGGCGTACAAATGGACTGGTGATAATCTGTTCTTCATTAAAGGAGACATGGACTCTTTAGCCTTTGGTGGAGGAAGTGGTGAATTCGGGCTTTGGCTGGATGGGGATCTTTATCACGGCAGGAGTCATTCATGCAAAACCTTTGGGAATCCCATGCTCTCCATGAAGGAGGATTTCTTCGTGCAGGATATTGAGATCTGGTCGTTTGAGTAGCAGCTTACGGAGAGGTACCTTTATGTTGTAGGTTGGAGAGAGGAATTGGACATCAGGCAGATCCCAAACCTTACTGCACATCACCACGGCTCCCAGGAAGCCCGTAACGGACGCTACTGTTACTCGCGCTTGTCGTATGTTACTCCTGCATTTAATACAGAGCTCTTCTTTGTGCTGTTTAGTATGTGTGTGTTTTGTTCAAGCCGTGTGCAGCGTCAATAACGAACGGGAGGATGTAACGTGGGACCCCCATTGAGTGGAGATGACGATGATAATGATGATGGTGGTGGCGGCATGGGTTTGGGCTGTCCGAGAACTGCCATAGTCCAATTTACCTGAGCCGAAGCGGCAGGAGTTTGTTTAAGACGATGTTAGCCAATAGGATGTCACTACTGCAACACAGGGATCGATGGGGGGAAAAAACTACAACGGAAAAAGAAAAGCAAACAACTGAAAACACATTCCCTTGCTCTCAGAGGAAGAATATGCATTTTTGGATCGCGGTGGCGTCCGCGAGAAGACGAGAACACATCCTTAGTTTCTTTTGAGGCGAAATATTCAAGTGTCGTGAAATTCGTAGTCTTTCTGTCGTTCACTATCATAGCACACCATGTCGAAGCACATAATCGGAAACCCCATAGTCGTAATGTTCTGTTCAGTGGGTTTTACATGTGAGTGTGGCTAACACCGACCCCTCCGCTTCGGAAGGGCCGACTTTTACTATTCGTAGGCAGAAATGTGTCGCAATAGATTTGTGGAATATGCAAATTCCTGTTCTGTGACCTCAAATAATCCAGACGGGGCACTTTTGTTTTCCCCGTTTCTCTTCCCAAGAGACCTTTTACGTCTTGACGGATTAATTGCTTTTCTGGGTATCATTTGAAAAGCCTGAGATGTGGTTTAATTGTTTTTCATGAATATAATGACAATTCTATATTTATGTATATGATTATATATATATACATAAATTCATATATATATATAATATAAATATATATATATATATATATATAATGATATATATATTGCTGTTAAGTGTGACAGTGATCTTTTCTGTGCTGATATCTCAGCTGTTACTAATATAATGTATATTACCCTGTAAATTAATGTTAAAATAGTAGATTTGTTCCTATATATATAAATATATATATATATATATATAAATGAATATACAGTGTGTGGATTGGTGGGTTGCTTCTCGCACTTTATTAATCTAGTTTCAAGCCAGGTTCTTCAGGCCTCATTAGCAGTAGCAGTACAGTATATATTTTTGTTTGTCTTTTAGATAATAGAGTAAATTAATCGTTTATAAAGAGCTTGCTGCTACTGTGGAGAGGAAAAGCCCCGGACGGGCATCTCAGCGGTCGAGCACAGGGTCGAATGTGACGGACTCTCTTCTTCTCACATGTCCTGTCCCAGCAGGGTTTTTTTTTTTTTTTTTTTTTTGGTCTGGTCTTTTGGTTTTTTCGGTGTGTAGATTGACTGTGCACACAGCGAGAGGAGCGCATACGTCCTTTCAGAGTCGCAGACGAGAAGTGCAAACAAATCCTTCATCTACTTCACCGGAATATAATGTTACAGTGATGTATAAAGAACAATGAATACTA
>TU157700
TCTTTTCTGTGCTGATATCTCAGCTGTTACTAATATAATGTATATTACCCTGTAAATTAATGTTAAAATAGTAGATTTGTTCCTATATATATAAATATATATATATATATATATAAATGAATATACAGTGTGTGGATTGGTGGGTTGCTTCTCGCACTTTATTAATCTAGTTTCAAGCCAGGTTCTTCAGGCCTCATTAGCAGTAGCAGTACAGTATATATTTTTGTTTGTCTTTTAGATAATAGAGTAAATTAATCGTTTATAAAGAGCTTGCTGCTACTGTGGAGAGGAAAAGCCCCGGACGGGCATCTCAGCGGTCGAGCACAGGGTCGAATGTGACGGACTCTCTTCTTCTCACATGTCCTGTCCCAGCAGGGTTTTTTTTTTTTTTTTTTTTTTGGTCTGGTCTTTTGGTTTTTTCGGTGTGTAGATTGACTGTGCACACAGCGAGAGGAGCGCATACGTCCTTTCAGAGTCGCAGACGAGAAGTGCAAACAAATCCTTCATCTACTTCACCGGAATATAATGTTACAGTGATGTATAAAGAACAATGAATACTAATAAATTGTTGTAACCTGGGACAGAATCAGGTCTTTTATGGCTTTTATTTTCTTAGGTCTTTCTTTAATCTCTTCACCACTGAATAAGCAAATCATTTTTTTTTTAATGCTGACTCATCCTAATACCATATTATTTTGGAAGGTAATTCCATGCAAATGCCATGTTATATATGAATAGCCTGTGGTGTATATCAAAGTGTCATTATCTTAACATCCAAAAACATATCTTTACAATACTCTCACCACAGCACTTTTGTGTAAGAGGGGGAAATTAATGGTTCACACAGGAATAAATCTTAGTTTGGTTCAGGGGGAAGTCTGTCAACATGAAACACTATTTTACTTTTGTACTCTGTCGTATTTCTTAGTGAAACAGCATATTCAATGGGTGAGGAAAAAAAAAAAAACATAATTTCATCCATTGGTTATTGAGTGGATCGTCAAAAGTTTCTATTAGAGCTTTTGCGGTAGCTCTGTACATTTCTATGGCATCGCTGTCAAAGAAGAATTAGCTGGTGAAGTGGTTTTGCTTGTTGTAGAGTTAATGAAAGTTATCGTGAGCATTGTAATGTTTAAAGCAGATGTCTTAACAAATGTCAGTAGACCCGAAAGATTTTAAAACGAGCAGTTCATTCATAAATACGTAAGATCGCTGTGGAAATACAAACCGGAAGACAAAAAACAACGAGCGCAGCGCTGAAAAGGGGCGGGGCTACACAAAGGGGAGGTCCTGAAAAGTGCGGGATTCATGACGTCAGCCAAAAATTGCCTCAGATTTAAAAAAAAAAAAAAGTTATTTAAATTTTTATTTTAAAAAAATTACAGAGATATGTATAAAAACAGGAATATTTTAATGTGCTAATTATAATAACAATGATGA

Function

symbol description
oxr1 Predicted to enable oxidoreductase activity. Predicted to be involved in response to oxidative stress. Predicted to act upstream of or within several processes, including adult walking behavior; negative regulation of neuron death; and negative regulation of peptidyl-cysteine S-nitrosylation. Predicted to be located in mitochondrion and nucleolus. Predicted to be active in nucleus. Implicated in cerebellar hyplasia/atrophy, epilepsy, and global developmental delay.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_02941870_02946290.mRNA False 2192 mRNA 0.43 5 2941870 2947897
TU157700 True 1440 lncRNA 0.35 1 2947338 2948777

Neighbor

gene id symbol gene type direction distance location
CI01000027_02895512_02924151 NA coding upstream 17673 2895512 ~ 2924197 (+)
CI01000027_02611537_02740618 ZFPM2, ZFPM2A coding upstream 201252 2611537 ~ 2740618 (+)
CI01000027_02530086_02589227 NA coding upstream 352394 2529638 ~ 2589476 (+)
CI01000027_02492454_02508459 NA coding upstream 433268 2492077 ~ 2508602 (+)
CI01000027_02455787_02458435 DCSTAMP coding upstream 482826 2455153 ~ 2459044 (+)
CI01000027_02981155_02982628 NA coding downstream 33114 2981011 ~ 2982885 (+)
CI01000027_02991231_02994560 PSMA2 coding downstream 43334 2991231 ~ 2994717 (+)
CI01000027_02995394_03005981 ATAD2 coding downstream 47497 2995394 ~ 3005997 (+)
CI01000027_03008262_03011156 NA coding downstream 60365 3008262 ~ 3011995 (+)
CI01000027_03014464_03027710 E430025E21RIK, STRUMPELLIN, KIAA0196 coding downstream 65959 3013856 ~ 3027862 (+)
G138775 NA non-coding upstream 208575 2732818 ~ 2733295 (+)
G138687 NA non-coding upstream 219511 2716814 ~ 2722359 (+)
G138661 NA non-coding upstream 225312 2703364 ~ 2716558 (+)
G138658 NA non-coding upstream 238645 2696075 ~ 2703225 (+)
G138655 NA non-coding upstream 247865 2683919 ~ 2694005 (+)
G138802 NA non-coding downstream 15920 2963817 ~ 2970808 (+)
G138817 NA non-coding downstream 40791 2988688 ~ 2988933 (+)
G138828 NA non-coding downstream 168473 3116370 ~ 3116659 (+)
G138830 NA non-coding downstream 174394 3122291 ~ 3122705 (+)
G138831 NA non-coding downstream 174977 3122874 ~ 3123166 (+)
G138515 NA other upstream 1265010 1664408 ~ 1676860 (+)
G138436 NA other upstream 1434054 1506961 ~ 1507816 (+)
G138290 NA other upstream 1942689 995970 ~ 999181 (+)
G138247 NA other upstream 2072295 855388 ~ 893121 (+)
G138238 NA other upstream 2110187 829774 ~ 831683 (+)
G138915 NA other downstream 536490 3484387 ~ 3486647 (+)
G138953 NA other downstream 554175 3502072 ~ 3520065 (+)
G140436 NA other downstream 1789501 4737398 ~ 4774262 (+)
G140440 NA other downstream 1832520 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 2101026 5050310 ~ 5055755 (+)

Expression


Co-expression Network