CI01000027_03008262_03011156


Basic Information

Item Value
gene id CI01000027_03008262_03011156
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3008262 ~ 3011995 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_03008262_03011156.mRNA
ATGTCGAGCAGAAGAAAGTCCACGACCCCCTGCATGGTGCTTCCGTCAGATGTTGTAGAGCAAGATCCAGATATGGAGGCCCTGGAAGGGAATGAAGGAGCCGAGAGTATGGCAGACGGTCCTACAGAGGGAGCAGTGGTTCCCATGGAAACTGAGACAGAATATGAGGGGAGCCATTTCTCCAGTGAGGACTGTCGTACTTCAGGAAAACGCTCAGGTCAAACATCACTAGAGCAGCCCATTACTGATCTAACCGCTGAAGGTGGTTTTGTGCAGACAGAGATGGAAGATAGTGATGACCCCTCAGTTACTGGAATCCCTATCAGCAAGACTCCCATAATGAAAATGAAAAGCAAGTCTGAACCCAAGAGAATAGCTATGTCTCTAAAAGGCACCAGTGAAAGCGAGACAATGGCTGAAAGTGAGTTGGAACTGGAGCCATTGGAAGCGTCAGTGATGAGCACTTCCATGGCACCAGAACACATGAGCCCATTGCTCACAGAGTCCATAAAGCCCAGCGTTCTTGTCAATATTTCAAACCCTGTGGTAGCAGATCAGAAGAAGCTTGTTATGAACCCTGCGACGGTTCTTCCGGCCGGCTTGGCCCAGGTGCTTTCTGCCTTGCAGGCCCAGCAGAGCGCTCAAGCTCAACTTCTAATTCCAGTAAGCAGTATTCCCACATATAATGCTGCTATGGACTCCAATGCAGTCCTGATCAACACCTACAAGAAGTTCCCCTACCCGTCGGTGTCTGAGATCATGGGACTTGCAGCACAGACCAAGTTCAGTGAGGAGCAGATAAAGATCTGGTTTTCAGCTCAGCGTTTGAAGCATGGAGTTAGCTGGACCCCAGAAGAGGTTGAGGAAGCCAGGAGAAAGCAATTTAATGGCACAGTCCACACAGTTCCCCAGACCATCACAGTCATCCCGGCCCATCATCTTTCTGCCACTAATGGCCTGCAGTCTATTCTTCAAACTTGCCAGATTGTGGGGCAACCAGGTCTGGTTCTGACACAGGTTGGCACGGCCAACAGCCTCCCAGTGACCACCCCGATAACACTGACGGTAGCGGGAATGCCCAATCAAAGCCAGACGCCCAAGATCGCAACCAATCAAACAAGCCCAGCTCTCAGTGAAACTAAGAGAGCTACTACGATTCAGCCCCCATCACTGACCCCTCAGGAGAACTCTGCACTCAGTGCCGATCACTTTGGCCTGCGCCCTAAGAAATCCAAGGAGCAGCTGGCTGAATTGAAAGCAAGCTATCTGAAGAATCAGTTTGCCACTGATGCTGAGATAGCTAGGCTAATGAAGTTGACCAACCTCACTAAAGGCGAGATTAAAAAGTGGTTCAGCGACACCCGATACAACCAGCGCAATTCTAAGAACAGCCACACCATCCTCCCGAACGACAATCCCAGGGGTAGTAGTAGTACCACCATTGTTATCGACTCCAGTGACGAAACGCCACAGTCTCCAACACCATCGCCTGTCAAAGAGAAGGAGACACGCGCCAAGACCTGGAACCCCTTCCCAGACTTTACCCTGCAGAAGTTTAAAGAAAAGACACCGGAGCAGTTGGTGGTTCTAGAGGAAAGCTTTCAGAAATGTGACACACCAACTGATGAAGAACTCAGCCGACTAAGAGCCGAGACGAAGCTTACCAGACGAGAGATTGATGCCTGGTTCACAGAAAAGAGAAAAGCCCCTGTGCCTGATTCCTCAGAGTCAAAAGTAGATGGTGAAACTTCCCAGAAGAAGGGGAGTCAAACTCCACCTGGAGGGAAGAGGCTAAGCAAAGAGAAGGTTACTAAGAAAACTCCAGAGCAGCTTCATGTTCTAAAAACTGCGTTCGTTCGCACCCAGTGGCCCTCGGCAGAAGAATACGACCAGCTGGCCGAGGAGAGCGGACTACCTCGTTCCTACATCGTCAACTGGTTTGGCGACACACGCTATGCCTGGAAGAATGGCAACTTGAAGTGGTATTTTTACTATCAAAGTGGAAATGTGGGAGGAACAAATGGCAACAAGAACAGAAAACGGAGGATTCGGAATCGTGGTTGGGGGAGAACCCGCAATAGAAAAGCGAAGAAGCCCACCGAATCGGAGAAGAATTTACCTATCAGGTTCAAGTCTGGGCGAGATATTCTGAAGGAATACTATTTGAAGCACAAGTTTCTGAACGAACAGGACTTGGATGAGCTTGTCGCCAAGTCTAATATGAGCTACGAGCAGGTGAGAGAGTGGTTCGCTGAGATTCATCGGAAAGAGGAAATGGGTACCAACCCGTTTGAAGATAAAATGGGAAATGTAGAACAAGATGAGGAAGAGGATGAATCACTGGGTGAAAATGAGACGGCAATTGAGGAGCAAGGACCCTCTGCCTTGGGAGATGAAGACGGTGACGATGATGACGACACTGACGACAGCGATTCCTGGGAGCCTCCACAGAGCATTCGAAAAACATTATCCATGTCTGAGGGTCAGTGATCTTTCTGAATTGGCTTTATTCTGAGCAATGGCCCTTGGTGGAAAACCATGACTGTGTTGGGTCTCGACCACATGCCCTCTACCACTGCACCAATTCTTCTTATATTGTACATAGTTTCAAGTAAGGTTTGACAAGTTCTTTCTAGCGTAAACATTGAGGAGAATGTTTTTTTTTTTTTTTTTTTTGGTAAGAATGTTTGACTACACCCTAAACTTGAGAAATCATGCACATGAACAGGGTTTTTTTTCTCTGCGGCTCTGAAATGCAGCGATAACTCAAGAGCCCTTGAATAATCAATGTCATGCATACAATCTGAACTTGGTCATGCACCTTAACTCTTGTACATGCAAAGACATTCTAGGCCTCTCTGTAGGGTCTTTTAAAGGGGCTTTTCTCATTTGGAGTTATATGGAGGATTCTTAGTGCCAAAGGTATAGTATTGAATGTTATGGTTCCCTTTACAATGAACACAATAGCTTATTGAGGGAATATGCATGAATACATTGTGTCAATTGGACGCAAGAGGCACTTTGTCGACCACCGTAATGTACGGGGTTTAAAAAGCAACCAGACACCTTATTTATGTAGGGCGAGACCAAACATTTCAAATTGAATTTCCAAATTCAGTGATATAAAAGTGTTTTATCTCTCATTCCCAGTGTTTTATCATCCACATACTGACAATGGATATCTGATATACAGCACAGTACATCCCGACGGGATGTTGTAGATGTTCCTGTGGTCCATCTGACTGCCATAATGGGGGTCATCTTCAAAATATAACAGCTAATACTCATCTTGTGGGAAAAATTATTTTGTGAAAATATCAGTGGTTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_03008262_03011156.mRNA True 3329 mRNA 0.47 2 3008262 3011995

Neighbor

gene id symbol gene type direction distance location
CI01000027_02995394_03005981 ATAD2 coding upstream 2265 2995394 ~ 3005997 (+)
CI01000027_02991231_02994560 PSMA2 coding upstream 13545 2991231 ~ 2994717 (+)
CI01000027_02981155_02982628 NA coding upstream 25377 2981011 ~ 2982885 (+)
CI01000027_02941870_02946290 OXR1 coding upstream 60365 2941870 ~ 2948777 (+)
CI01000027_02895512_02924151 NA coding upstream 84065 2895512 ~ 2924197 (+)
CI01000027_03014464_03027710 E430025E21RIK, STRUMPELLIN, KIAA0196 coding downstream 1861 3013856 ~ 3027862 (+)
CI01000027_03110196_03113083 NA coding downstream 97212 3109207 ~ 3113409 (+)
CI01000027_03142352_03156415 NA coding downstream 130115 3142110 ~ 3157077 (+)
CI01000027_03159177_03163102 NA coding downstream 146974 3158969 ~ 3163325 (+)
CI01000027_03174793_03181990 NA coding downstream 162798 3174793 ~ 3182308 (+)
G138817 NA non-coding upstream 19329 2988688 ~ 2988933 (+)
G138802 NA non-coding upstream 37454 2963817 ~ 2970808 (+)
G138775 NA non-coding upstream 274967 2732818 ~ 2733295 (+)
G138687 NA non-coding upstream 285903 2716814 ~ 2722359 (+)
G138828 NA non-coding downstream 104375 3116370 ~ 3116659 (+)
G138830 NA non-coding downstream 110296 3122291 ~ 3122705 (+)
G138831 NA non-coding downstream 110879 3122874 ~ 3123166 (+)
G138832 NA non-coding downstream 112802 3124797 ~ 3125029 (+)
G138833 NA non-coding downstream 113454 3125449 ~ 3125675 (+)
G138515 NA other upstream 1331402 1664408 ~ 1676860 (+)
G138436 NA other upstream 1500446 1506961 ~ 1507816 (+)
G138290 NA other upstream 2009081 995970 ~ 999181 (+)
G138247 NA other upstream 2138687 855388 ~ 893121 (+)
G138238 NA other upstream 2176579 829774 ~ 831683 (+)
G138915 NA other downstream 472392 3484387 ~ 3486647 (+)
G138953 NA other downstream 490077 3502072 ~ 3520065 (+)
G140436 NA other downstream 1725403 4737398 ~ 4774262 (+)
G140440 NA other downstream 1768422 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 2036928 5050310 ~ 5055755 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002614 NA coding CM030136.1 CM030136.1 22959715 ~ 22968693 (-)