G138687


Basic Information

Item Value
gene id G138687
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2716814 ~ 2722359 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157573
TATATATATATATACAGTATCTCACAAAAGTGAGTACACCCCTCACATTTCAGCAACCATTTTATTATATGTTCTCAAGGGACAATACTATAGAAATGAAAATTGGATATACTTTAGAGTGGTCAATGTGCTGCTTGTATAGCAGTACAGATTTACTGTCCTCTGAAAATAAGTCAACACACAGCCATTATTGTCTAAATAACTGGCAACAAAAGTAAGTACACTCTAAGTGAACATGTCAAAACTGTGTCCAAAGTGTCAATATTTTGTGTGAGCACCACTGTTATCTAGCACTGCCTTAATCCTCCTGGGCATGGAATTCACCAGAGCTGCACAGGTTGTTGCTGGGATCCTCTTCCACTTCTCCATAATGACATCACGGAGCTGCTGGATGTTAGACACATGCCGTTTCTCCACCTTCCGCTTGAGGATGCCCCACAGGTGCTCAATAGGGTTCAGGTCTGGAGACATACTTGGCCACTCCATCACCTTCAGCTTCCTCAGCAAGGCAGTTGTCATCTTGGCAGTGTGTTTGGAGTCATTATCATGCCATGCAGCCCCAGACCATGATGCTACCACCACCATGCTTTACTGTAGGCAAGACACAATTTTCTTGGTACTCCTCACCAGGGCATCGCCACAAATGCTGGACACCATCTGAGCCAAACAAGTTTATCTTGGTCTCATCAGACCACAGGACATGGTTCCAGTAATTCATGCTCTTGGACAGGTTGTCTTCAGCAAACTGTTTGCAGGCTTTCTTGTGAGCCAGCTTCAGAAGAGGCTTCCTTTTGGGACGACGGTCATGCAAACCGACTTGTTGCAGTGTGCGGCATATGATCTGAGCACCGACAAGCTGACCTGCTTCTGCAACCTCTAAAGCAATGCTGGCAGCACTCATGTGTCTGTTTTTTGAAGCCAGCTTCTGCACCTGACGCACAGTACAAGGTCTCAACTTCTTTGGCCTGTTCCGAGTGGAACCCGTCTTGGAAAACCTCTCTCTATGACCCTGGCCACTGTGCTGTAACTCAGTTTCATGGTGTTATCGATCTTCTTATAGCCTAGGCCATCTTTGTGGAGAGCAACAATTCTAATTCAAATCCTCAGAGTTCTTTGCCATGAGGTGCCATGTTGAACATCCAGTGATCAGTATGAGAGAGTTGTACTCAAAGCACCAAATTTAAACTGCTCTAATACAAGATCCACACATTTGTATGGTCCTGTCAAGCAGACAAAAACATGAACATGATGAATAGGACATGTGGCTTTGCATGGTTAAACAACATACAGCTGTTATCACTTAGGGTGTATTCACTTTTGTTGCCAGCTATTTTGACAATAATGGCTGCATGTTGAGTTATTTTCAGAGGACAGTAAATCTATACTGCTATACAAGCAGCACATTGACTACTCTAAAATATATCCAAGTTTCATTTCTATAATATTGTCCCTTGAGAAGATATACTAAAATGGTTGCTGAAATGTGAGGGGTGTACAAAATAATAATGATTTATTAACAAAAATAAATAAAATAGATATTATATATGTATAAACAGTATGTGTGTGTGTGTGTGTGTGTATATATATATATATATAATATATATATATACAGATCCCAAACTTTTGAAAGGTAGTGTGTACATTTATATAATTTATTTTAAAAAGCAGCTCTGGTGTAAATCTAAGAAGTTATGCAATACTTCCAAAAATGTTATCTGATTATGTAACATATTACCCTCATCTCTGGTTATGGTGTGTGACATCTTATCGTCTTGTAGGTAAACTAAATGTCCTTTTGAAGTGTTCTGGTTCATCAGCACAGGAGAGAGTCATTTATTGTATTAGCATGAGGCCACAGAGAAAGCGTTCCGGTCACGGCTGTCCTTTGATTTTTATGGAGGAAAATGTTGTCAGGAGTGGAAAAGAGCCAAAAGTGAGTGAGTTCCCCAATGGGGCGTTTGCCTACTTTCAAGTCTTTCATTAAACTTCACAAGCCAGAGTTAATCCTTGCTACAGCATACAACAAAAACGCTGCATTCAACAATTGAAAAGGAGAAAAAAAAAAAAAGAAAATACGATGGGGGGAGGGTGGAAAAAGAGAAAAGAACAGGCCCGATCGCTCCATATTCATATTCCTATGCAGCCGTTATCACTTAAAAGGCTTTCTAATTACAACAACAAGACAAAAACTCCTTGGATTCATTCCAGACCCGCTAAATGATAAAATAAGCTCGCACTCTCTCTGCCGCTTAATCTCCGTAAAGCACCTTGGAGCGTCATCTCCCAAATACATGCCACTGAATGTGGAAATGCCATTTGGAGATGCAGGTGTGACATTTGATAAGAAACTTCTGGATTAAATATGTTCAGCTAATGAGGAACCCAGCTACCATCAGGGCAAACTATTGGTCGGATTGTGTGCGGGCTGATAACATTCCACAACTCGATTATTAATAAACAGCCCCAGTCTCTCTCTCTCTCTTTCTCTCTCTCCCTCTCTCTCTCCTTCAGCTAAAGATGTTTTTTTCTCATTAAGGATGAGAGCGAGCAAGGGTGTGGGTTTAAAAGTGCATGTTAATGCTGCACTGAAACAAAAAGTTGAAAGCAGAAATGAGTTCAGATCAGGGGCTCGGAGGGTTTTTTCAGTGGTGGTGGTGGTTGCCGCGGCACGGCTTCAGGGCAAGCGTGTCGTCCGCTAAGCGCTTGGTGCATTGAGCCAGAAGTCCCCTGCCCAAGCTTGACATTTAGAGTGATTTGGAGCAGATTAAGGCCGCATTAGTGCTGTGGCCTGTCAAAGGGCCGTTAATGAGGTGTGGGGGGCGTCCGGACTCAAACGATGGTCCCAGATTCGGAGTTGACGCACTGATGCTCTGTAGTTGGTGGAACCGATCAATAAATCCAGGCCGTACGCATCACGGCGGGCCCAGAGAGTTTCTCAGAGGATAACTGGACTGCTGTGACGTTCCTGCCAAAGTCTCCGGCTCGTCTCATTGGAGAGTGTCCTTCTAAACCTGCTTAGCTCAGCCAGCCAGAGAAAGACTCGGCGAATGACGGCAGTGTGTTACCCGCACCAGTGGCTGTCCGCAAATATCCATATTTAAATTAAAATTAGAAAAACTAAATATATTCCAGCGCCGGATTTGGCAGGAATTGGGCTGTCTTATAAGGCCAAGTGAACTCTACAAGAAAAATGCATGTTTATATTTGTGCATATTTAAAAATGTAAAGTTTTTTGGGTTTTTTTCCACTTATTTAGACAAATAATTGCAGACTAGGTCATTCTGAAAACACCTTATGACTTGTACAAAATCTAGTCGACCAGTCTGAATTTTATTGTAGCATCTGTGACTGTTCTGTGTGATTTGAAGACTACAGTAGTTTCACACCTAAAATTACAATAAACTTATAGACAGTCATATTTTTTTAATAATGCGGTGATTGATGCCACTTTTTTAACTTTTAATGAACATCAAAGTTTTAGGTTAAAATCTGTGTATAGTTGTATATTTTAGCAATCTTTTAGAAATATATTTTTGTAAGTGTACCTTGTGTATCTTTTGGCGTCATAAAACTACTGTCGGCATTCACTAATTTTACACGCAGTGCAAAATTAGCGCTGAAAAGGCGTGGGCTGACCTTATTGCATATGCATTTGTAGGAGTTTCCCTTTCAGACGCAAAATTTATTGGAGGAGAGTATTTGCAATTGAATCACGCAACGCAATTTACTAATGCTTGTGGTAGTCAATTTACTGGTATTTGAGCCATTATTTAATGCCCAAAAAAACATGTCTTAACCCATTTTGCACGTGGCTGCAATTGTTGCTGCTAGGAGGAGACACCGCAGAGAATAGAGAGCGCGTGGTAGAAGGGAGAAAATATTTTCCACTCATATGAATTTCTTCGGAATGCCAGAGGAAGACGTTATTCGTATATTACATGTAACAAGTTGCGCCTGTGTCGACCCGCACCTGATGAGCATCAGCTCTGCTTACTTGCGATCCAACGCTAATTTGCGCAGCTCTTGCTAGATTGCATTGGTCATTATGTAAATGATTTGACTGCTTCTGTGTTCTTTAATTTGCGTGTCAGCAGTAGATCAAGCACAAAACTTGCCACTCCCATCGGCACATTTGTGGAATTGCGCTCTTATGCTAATTTGCCCCTTTTGGAAAATCTGGCCCATAGTATAGCATGACACGTTACAGGACATGTCAGCTTTTTAAAGAGTAATATTAATATGACTACTACCCATAAGTTTAGTAGTAATGTCCCAGACTCATGGGTTTGATGGTCAAAAATTAATATTCTGTACAAAATGCATACATTAGCTGCAAAATAAAAACACTGGCCATTTTGCATTGTTTTAGCATATGCAAATGAAGGTTGTAGGTGTCATGCTGTCGCTGAAGAAATGCTTTATGATGATAATGAGAAGTTGGGTTAATTTTCAGTCTCTGCCATCAAGCGTGAGAAGTTCACAGACCCGCTGTTCAACGCCGCCCAAACGGGGCCACCACACAGATAACGAACGGGTGATGATGTCACGTGCCAGTGGCGGCGGTCAATTACAGAGACAATTGAAACCGTGAGCTAAATGAATCATTCAGACAGCATATCAAACGCAACCGCCACAGACTGGCATGTTGCACGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTTCATTTAAAAGATAAACAAAAGAGCAATCTACAATCCACTGTCATTAAAGAGTCTGGGAGATTTATGTATTTGACCCTAGTCATATTTAAATGGCAGCATAAATAAAGTTCTCTTGAATTGTGGTTGGATGATGGCAGTGTTGCAGTTTCTGGAGGATGGCATGACTTGACTACATGCTGGTGTTGTGGTAGCTTCTTTAACACTGTAGATTGTCAAGGTATAAGCTACTCATGATTTTAATTATAAAACTTTACAAGCTGCTAAGAAATGGAAGACATGGATGTACAGTGTATGTACTTACAGTGTATGTACTTACAAACTAAGTTAGCTATTTTGTAACAGAAGAAGGAATAAGTTGTTAATTGCATTGTATTGTAACTTTTTTCTAATGGTATTTGACAGCTTTAAACAACACCGGTACCACCGATACATCAATAAAACTTTGAAAACACTATAATTTAGCACCATAATATAAATAAAATCTAAAATATATAATTTTGTACAACAAGAATATGTAAAATATATAAGGTGTAAATAGAAAATAATTGCCTGCACTGGATTTCAAATGAATCAGTGAAAAGGTTTAAACAAACAAATAAATTAATATAATTTTTTTGTGCAAAATATTATTATTATTATTATGTATTTTTAGAGCAAAATATACAATAATATTATCAAATTACAATAGCCATATATATATATATATATATATATATATATATATAAAAATAAAAAAAATACAATAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157573 True 5432 lncRNA 0.40 2 2716814 2722359

Neighbor

gene id symbol gene type direction distance location
CI01000027_02530086_02589227 NA coding upstream 127338 2529638 ~ 2589476 (+)
CI01000027_02492454_02508459 NA coding upstream 208212 2492077 ~ 2508602 (+)
CI01000027_02455787_02458435 DCSTAMP coding upstream 257770 2455153 ~ 2459044 (+)
CI01000027_02429134_02451902 RIMS2A, RIMS2 coding upstream 264279 2427563 ~ 2452535 (+)
CI01000027_02419674_02422700 NA coding upstream 293686 2419633 ~ 2423128 (+)
CI01000027_02895512_02924151 NA coding downstream 173153 2895512 ~ 2924197 (+)
CI01000027_02941870_02946290 OXR1 coding downstream 219511 2941870 ~ 2948777 (+)
CI01000027_02981155_02982628 NA coding downstream 258652 2981011 ~ 2982885 (+)
CI01000027_02991231_02994560 PSMA2 coding downstream 268872 2991231 ~ 2994717 (+)
CI01000027_02995394_03005981 ATAD2 coding downstream 273035 2995394 ~ 3005997 (+)
G138661 NA non-coding upstream 256 2703364 ~ 2716558 (+)
G138658 NA non-coding upstream 13589 2696075 ~ 2703225 (+)
G138655 NA non-coding upstream 22809 2683919 ~ 2694005 (+)
CI01000027_02611537_02740618 ZFPM2, ZFPM2A non-coding upstream 45688 2611537 ~ 2740618 (+)
G138771 NA non-coding upstream 95221 2621370 ~ 2621593 (+)
G138775 NA non-coding downstream 10459 2732818 ~ 2733295 (+)
G138802 NA non-coding downstream 241458 2963817 ~ 2970808 (+)
G138817 NA non-coding downstream 266329 2988688 ~ 2988933 (+)
G138828 NA non-coding downstream 394011 3116370 ~ 3116659 (+)
G138515 NA other upstream 1039954 1664408 ~ 1676860 (+)
G138436 NA other upstream 1208998 1506961 ~ 1507816 (+)
G138290 NA other upstream 1717633 995970 ~ 999181 (+)
G138247 NA other upstream 1847239 855388 ~ 893121 (+)
G138238 NA other upstream 1885131 829774 ~ 831683 (+)
G138915 NA other downstream 762028 3484387 ~ 3486647 (+)
G138953 NA other downstream 779713 3502072 ~ 3520065 (+)
G140436 NA other downstream 2015039 4737398 ~ 4774262 (+)
G140440 NA other downstream 2058058 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 2326564 5050310 ~ 5055755 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G57627 LOC107562619 non-coding NC_047598.1 CM018544.1 643704 ~ 753893 (+)
mexican tetra (Astyanax mexicanus) G300837 tra2a,LOC107688335 non-coding NW_019172832.1 APWO02000050.1 2016115 ~ 2029671 (-)