CI01000027_02995394_03005981 (ATAD2)


Basic Information

Item Value
gene id CI01000027_02995394_03005981
gene name ATAD2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2995394 ~ 3005997 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_02995394_03005981.mRNA
ATGGTGATGTTGCGCAGTAACGGTGATATGGACTCGAGCTCGGAGTTTCTGTCGCTGAACCCGCCTCAGCGAAAGTCCGCACGGCTGAAAAAGGCCCATGATGACAGTTTAACGAGCGCCGAGGACAGTCCGGCCAATGGATTTTTGTCTGTAAAGGAGGAAAACAGCATGACGAGCAGAACTCAAAGAGGAAGACATGTAGTTACCTTCGCTGATATGAATGGACAAACCAGCAAATCGCCTCCAAAAAATGAGAAAAATGAGGTGGAATCAACTCCAACTTCTCGAAGCCTGCGTGCTCGAATTCAAAGGCGAGAAGAAGACAGTGCTGTGAGGCGTAGCTCCAGAATCACAAGATACAAGCTTGATGCCAGGAACCAGTCGGTCCTCTATGACAGGCTCATCACGAACACTGCAGAGGCTGTGCTTCAGAAGATGGATGACATGCAGAAGATGCGTCGGAGACTGAGGAGCAGAGACAGTGAGGAGGAGAATTTGAGAATTTACGCTGGAACAAAGAGGAAGAGGGTCACAAAACCTTCTGTCAGAGGACAGGAGGAGAGTTCAGACAACCAGGAGAATGGCAGGAGTGAGGGTAATGGGAGAAGACATGCCATCCACAGTAGTGACTCTACCTCATCCTCTTCTGATGAAGAGAAATTTGAGAGACGGAGAAGTAAGAGTCGTAGCAGGTCAATAAACAGATGCCTCCCTATGAATTTGCGGAAGGAGGATTTGTTGGGAATCCATAAGGACAGGATTAAAATTGGAGCAAGTCTCGCAGATATTGACCCAATGCAAATTGACCAAACGGTGCGCTTTGACAGCATTGGGGGTTTGGGAAAACACATCTCCGCACTGAAGGAGATGGTTGTGTTTCCTTTACTCTACCCTGAAGTCTTTGAGAAGTTTAAGATTCAGCCTCCAAGAGGCTGTCTGTTCTACGGCCCTCCTGGCACAGGAAAGACTCTGGTTGCGCGAGCCCTGGCAAATGAGTGCAGTCAAGGCGAGAGGAAGGTGGCGTTCTTCATGAGGAAAGGGGCAGACTGTCTCAGCAAATGGGTGGGCGAGTCTGAGAGACAGCTCCGTCTCCTGTTTGACCAGGCATACCAGATGCGTCCATCGATTATCTTCTTTGATGAAATTGATGGCATCGCACCTGTTCGGTCCAGCCGGCAAGACCAGATACACAGCTCCATTGTGTCCACCCTCTTGGCTCTTATGGATGGGCTGGACAGCCGTGGTGAGGTGGTTGTTATTGGAGCCACTAACCGTCTGGACTCCATCGATCCTGCGCTCAGACGGCCTGGACGATTCGACAGAGAGTTTCTCTTCAGCCTACCAGACAGAGAGGCTCGCAAAGATATTTTGAAGATCCATACCAGGCAGTGGGACCCGCAGCTATCTGATGTGTTTCTTGAGGAGTTAGCTGACAAGTGTGTTGGTTACTGCGGCGCAGACATCAAAGCAGTGTGTGCGGAAGCAGCTCTGTGCGCCCTGCGCAGGTGCTACCCTCAGATCTATGCCTCCTCCCAGAAGCTCCTGCTGGATTTGGAGTCCATCAGCGTGAGTGGCCGGGACTTCCTCTCAGCCATGAGGAAGATAGTTCCAGCTTCACAGAGGGCGGTGGCATCTCCAGCTAAAGCTCTCACCCCTGTTATTGAACCCCTGCTGAGCTCTGCTCTTAATAACGCCATGGAGATGCTGCAGAGACTCTTTCCTCATGTAGAGAAGGGCCTTAAGAAGAAAAGAGACGCCGTCAGTTCAGCCACCCCAGAGGAGGCTTGTGCCCAGGTTTTCTGTGAGGCAAGGAGAACTGCTCCCAGTATTCTGTATATTCCACACATCCAGCGCTGGTGGGACACCGTGAGCTCCACTTTAAAGGCCACATTCATCAGTCTCCTGCAGGACATCCCTTCATTCTGCCCCTGCCTCCTTCTCGCCACGTGCAGCTTTCCTCACGACACGCTCTATCCTGAGGTACAGGACCTTTTTCATGTTGAGTATGGTGAGGTGTTCGATGTTCCACTTCCTTCTCGGGAGGAGAGGCTCAGATTCTTTGAGGATCTTATTTTAAATCAAGCTGCTAAAGCACCAGCATCTAAGAGAGAAGCAGTGGTCCAGGCACTAGAGGTGTTACCGGTGGCCCCTCCGCCACCTCCCCGCCAGCTGTCTGAACAGGAGATGCAGAAGCTAGAAGAGCAGGAAGAGGACACACTAAGGGAACTCCGCCTCTTCCTGCGAGATGTCACCAACCGATTGGCTCAGGACAAACGCTTCAAGGCTTTTACAAAGCCTGTGGACACAGAGGAGGTTCCTGATTACACTACAGTCATCAAACAGCCCATGGACTTGTCCACAGTGCTATCCAAAATTGATCTGCACAAGTATGAAACTGTGGCGGCTTACCTGCATGATGTGGATCTGATTTGGCAGAACGCTCTTGAGTACAACCCAGACAGAGACCCCTCAGATCGGCTCATCAGACACCGTGCCTGTGCTCTCAAGGACACTGTGCATGCCATAATCAGAGATGAATTAGATGAGGACTTTGAGAAGATCTGCGCTGAGATCAGGGAGTCTCGCAGCAAACGAGCTTCACAGATGAAAAAGAAGAGGAAAAACCGATGGAGAAATGGCTTCATCCGCAGAAAGAAGTCTTGCTCACATTTAAACTCTAAAGACAACCCTAACACAGCAGAATCAGGGGATGAAGAAGAGGATGAAGATGATGATGGAAAACTGGCTGAGAGTGAAGATCCAGAGAAGATGAAAGATGTTGAATGTGAGTCAATGGAGGCTGACGAGTGTGCTCGTGCAGAAGAACCCACAGAATCCACTGCAGAAGTGCGGAACAACATCTCTAATGAGGGACGGGAACATGACAATGCTACCTCTGCAGTGGATGAGGTAGTGAGTGTTGAGACCGTCCAGAATAATGCCACAGATGGGCAAAATGATGTCCAAGCATCAGAGAGCACTGAACCTAAGAGGACAGAGCCAAGTGCAGAGGACAGCAGTGGAATGGAGTACAGACAGAGGCGGATGACGAGAGGTTTTAAGATCCAAGCCGAACAGCAGAGTCTCATCAGTGTGGATGCTGCCATGAAGATCCTGGAGCAGAAGAACCTGCCTCTTATCGTGGACCACAACAAACTGAAAGAACTTCTACAGAGAGTTGTGGACATGACGGAGGGATATGAGGTCAATCAACTGGAGAAACTTTATGCTCTGTTGTGCCAGAGCATTTACAGACACAGGAAAGATTATGACAAGACTGCACTTATACAGGAGATGTCAAAAGAAGTTGAAGAGTTTTCCTAGATTTCTTTTTTTTTTA

Function

symbol description
atad2 Predicted to enable ATP hydrolysis activity; chromatin binding activity; and histone binding activity. Predicted to be involved in negative regulation of chromatin silencing and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human ATAD2 (ATPase family AAA domain containing 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_02995394_03005981.mRNA True 3340 mRNA 0.50 24 2995394 3005997

Neighbor

gene id symbol gene type direction distance location
CI01000027_02991231_02994560 PSMA2 coding upstream 677 2991231 ~ 2994717 (+)
CI01000027_02981155_02982628 NA coding upstream 12509 2981011 ~ 2982885 (+)
CI01000027_02941870_02946290 OXR1 coding upstream 47497 2941870 ~ 2948777 (+)
CI01000027_02895512_02924151 NA coding upstream 71197 2895512 ~ 2924197 (+)
CI01000027_02611537_02740618 ZFPM2, ZFPM2A coding upstream 254776 2611537 ~ 2740618 (+)
CI01000027_03008262_03011156 NA coding downstream 2265 3008262 ~ 3011995 (+)
CI01000027_03014464_03027710 E430025E21RIK, STRUMPELLIN, KIAA0196 coding downstream 7859 3013856 ~ 3027862 (+)
CI01000027_03110196_03113083 NA coding downstream 103210 3109207 ~ 3113409 (+)
CI01000027_03142352_03156415 NA coding downstream 136113 3142110 ~ 3157077 (+)
CI01000027_03159177_03163102 NA coding downstream 152972 3158969 ~ 3163325 (+)
G138817 NA non-coding upstream 6461 2988688 ~ 2988933 (+)
G138802 NA non-coding upstream 24586 2963817 ~ 2970808 (+)
G138775 NA non-coding upstream 262099 2732818 ~ 2733295 (+)
G138687 NA non-coding upstream 273035 2716814 ~ 2722359 (+)
G138828 NA non-coding downstream 110373 3116370 ~ 3116659 (+)
G138830 NA non-coding downstream 116294 3122291 ~ 3122705 (+)
G138831 NA non-coding downstream 116877 3122874 ~ 3123166 (+)
G138832 NA non-coding downstream 118800 3124797 ~ 3125029 (+)
G138833 NA non-coding downstream 119452 3125449 ~ 3125675 (+)
G138515 NA other upstream 1318534 1664408 ~ 1676860 (+)
G138436 NA other upstream 1487578 1506961 ~ 1507816 (+)
G138290 NA other upstream 1996213 995970 ~ 999181 (+)
G138247 NA other upstream 2125819 855388 ~ 893121 (+)
G138238 NA other upstream 2163711 829774 ~ 831683 (+)
G138915 NA other downstream 478390 3484387 ~ 3486647 (+)
G138953 NA other downstream 496075 3502072 ~ 3520065 (+)
G140436 NA other downstream 1731401 4737398 ~ 4774262 (+)
G140440 NA other downstream 1774420 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 2042926 5050310 ~ 5055755 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002617 NA coding CM030136.1 CM030136.1 22971505 ~ 22986571 (-)