AMCG00002633 (zfpm2)


Basic Information

Item Value
gene id AMCG00002633
gene name zfpm2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23677942 ~ 23682594 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002633
ttttttgtcttcGCTAGGTGGCCAACTGTGGTGTACGACTACTAAGAACATTGTGGAAGGCGAAGAGTTAGTGGCGTTTGCTGTAGATTTTGACTCCAGGCTCCAAGCTGTCAGCCACATGTCTCTGACTGAAGGAATGTACCCAGCACGCCTTTTGGACACTATACAGCTACTCCCTCAACAGGCTGCCATGGCATCAATCTTACCAACTGCCATTGTCAACAAAGACATCTTCCCTTGCAAGGCATGTGGGATCTGGTACAGGAGTGAGAGGAATTTGCAGGCCCATCTGATGTACTATTGCAGCGGCAGACAGAGGGAGCCGGAGACGGTGGTGGAGGAAAATGAGACCAGCCCCCATCAAACCCCCAGCATTTGCCCTTTCCCGCAGTGCAACAAGAGCTTCTCTGGGGCCCGGGCCCTTGAAATGCACCTAACGACCCACAACAGTGTCAAAATGGAAGAGACTCTCCCTCCTGGCACCAGCTTGAAATGCACAATCTGTAACTACACAGCAGATTCTCTTATTACATTCCAGCACCACATCCTCTCTCACCTGTCACAGGCTGCCTTCAGATGCAATCACTGCCATATCAGCTTCCAAAACCACAGGGAACTCTTGCAGCATCAGGAATTACACGGGCACAGCAGCAAACTTCACAGAGAGAGCGACAGTGAACACTCCCCCAGAGGCAACGAAGAAAACCTGCAGCAGGCGAGAGCCGAGCTGGGAAACAGGAAGGATGTCCTCCAGAGTCCCAAAAGCGCACAGAACAAGGACATGAACTCGGACGCAGAGCTGGAAAAGCCAGAGAAGAAGCCCACGCTGTCTAATCAGAAGGGAGAGACACACCTGGGTAATAAGGCCAGTTTTTCATATACAAGGATCAAGTCAGAGCCATCAAGCCCAAGACTGGCTTCATCTCCAGTGCAACCCAATATTGGGCCTACATTCCCCATGGGACCTTTTCTGTCCCAGTTTGCTTTCTCCCAGGACATTTCAGTGGTCCCTCAAGCTTCAGAGATACTTGCGAAAATGTCAGAGCTGGTCCATCGTAGGTTAAGACACGGAGGGAGTAGCTACCCTCCAGTGATCTATAGCCCCCTCATGCCAAAGGGGGCTACCTGTTTTGAATGCAATATCACCTTCAACAACTTGGACAACTACTTAGTCCATAAAAAGCACTACTGTAACAGCCGCTGGCAACACATGGCCAAGTCACCCGATTTCTCCAGCGTCTCAGAAAAGGTGACAGAAGCAGTAAGCCCAAACAGCGGCCATAGTTCGGTCAATATATTGAACGCCGTCTGCCATCCCTCAGATCCTGACAGCCATCTTATTCAATCTGCTTGTTTGAACTCGTCAGTGTTGGACATGATCAATTCCAGCGGCAAAGTGCCTGAGAAAGAACTTCCTGGACAAGTTAAGAAAGTTTCAACTCCTACTGGCAGCGATGAGAGGCTCAATGGGAAGCAAGCGGAGGTGAAGAGTCCAAGCACATCTGTAGTGGAAAATGAAAACGACCCTAACAAAACGACATGCGAAGCTTGCAATATCACATTCAGTCGTCACGAAACCTACGTGGTGCACAAACAGTATTACTGCGCGACTCGGCACGACCCGCCAATGAAGCGCATTTCAGCGAACAAAGTGCCTGCAATGCAGAGGACGATGCGCACGCGCAAGCGGAGGAAGATGTACGAAATGTGTCTCCCAGATCAAGATCAACGGCCTCAGCTGGGGCAGCCAGGCTTTCTGGGCGTTCCGTCTTTGGGCAGCCCCTGCACTTCTCAAGACGCCGCGGAGAATCTCGGGGATCGTTTCCATCCCAGGTGTGATGTGTTTCCGGGGATGGTTCCAAAACATCTAGAAGCTTCGCTCACTGTCACGAAAGCTGTCCTGGCACCTAAATGCAATACGCTAGATCACCAGGAACTTGATGCCCCCATAGATCTCAGTAAAAAATGCTCCCCTCATTCAGAAAAATCATGCAATTCTCCCAAAAGACTTTTGGACTATCACGAATGTACAGTGTGCAAAATCAGTTTTAACAAAGTGGAGAATTATCTAGCGCATAAACAGAACTTCTGCCCCGTTACAGCTCCCCAGCACAATGAGATCAGCAACCTGGACCAAACAATGTTCCCAGAAATTAAAATCGAGGGCAATAATCCCGACGACAGCTTTGACAAGAGCCCCGCAAAGTGCGATAAAAACGGGAGCGCCAAACTGATCGCACAAAACGGTAGCCTGTTCTCCTCCCATTTAGGGACCTTGCCCGGACTGAAAGCATTCAGTGAGAGTCAGCTGATTTCCACGAAAGAAGAGAACAAGAATTTGTTTCTGCCGCATTGCCTTTATCCTGGAGCAATAAAGAAAGTGAAGGGGGCGGAGCAAATATCGCCGTACTACGGGATAAAACCCACAGATTACATTGCCGGCAGTCTGGTCATGCAGGGCGAAACTAGCGAGCAGGATCAGAGCACAAATGGAGGAAGTGACACTGTCAAAGAGCAGCCAGCGCCCAATGGCTGTCCTCACCCGAACAAAGAACCTCTGCCACTGCTGCCTAAAAACAGGGGCATGGTAATAGTGAACGGAGGACATAAGCCAGAGGACAGGTCTGGCTCCGTTACCTTGCAGCAGGAAAACTTGCCCCACAACTCCCAGCAACCAGACAGTCACCCGTCCCCGACTTGGGTATCGGAAAACCCCGCTGACGCCAACGAAAACGTGTCGCCTTCCATAAAGTCGCCGCCAGAGGAAGCGCTGCCCACCATAACGAAAGGTGTAAACGGCTCTGCCCAAGCTGCCGGCAGCGGCAAATATTGCCGCCTGTGTGATATTCAGTTTAACAACCTGTCGAACTTTATTACACACAAGAAGTTTTACTGCTCCTCACATGCGGCAGAACATGTGAAATGaagttttgtctttctttttgtttgtttgtttgttttgggtttttttggtACACGGTTGTGTCTGGAATAGTGCATCATGCAGTTTTATATGCTGCTTGTGGACAATCAAGAGAAGCTTCTTCTTTCCTTACTTTAAGACTTAATGCAAATCATCGGTAAAAATCAAGTGTAATATTGGTGCCACTTTcacatacttttatttattttacaatcagTATTAATAGGAGTAGTgatcttaatttaaatgaaaataaatttataTCAGAGttgtttgtaatgttattgtataGTCATTCTTGTGTAGCACACATTGTTTACACTGTAATGTAGATTCAATGATACAATagacacagaaaacaggaaatgcattttagaCGAATAGCTACAAAAGCACTTGTGTATTTCTATCTTATTTGCTGttactgttttttgtatatGCGTAAATATAATTTGCGGCTATAATTCATGACTTCTTGCCTTAAACCACTGTTTTGGGGGATCACCAGGCACAATCCTGCATCTTATATTTCAGCATATACATTGGTCACTGGGCTTTGCATATGTATGTAGCTGTTTGTCCCCGTCTCTTTTCTTAAATTCAGAACTGTATGTTTTAATGAGGATGACAGCGTTCTTGTATAGtacttgtatttttgtttgctgatgcCCTTCGGTCTCCCTTTTTAAAACTTTGCTCTCAACGCAATACTTTCTAAAAGAACATTACTGAAAGCAGTATTACGAAAAGGGCGGTGCGTCAGATTTTCTTTGTATCCCATGAAAATGAAATTCTACAAGAATGAAGTTTATTGATGTTGCTAAACAAGATGGgggagtggggagggggggggacacTAATGTAACATGATCATTCCAATGTcctaataatgaaaaaagaaaaaaaaatcttaacaaCGTTGTTGCTATGCATGTATATGGATGGAATAAAATTCCAGAACTGTTGgaaattttaattttg

Function

symbol description
zfpm2 Enables transcription coactivator activity and transcription corepressor activity. Involved in cardiac chamber morphogenesis; negative regulation of fat cell differentiation; and regulation of transcription by RNA polymerase II. Located in nucleoplasm. Implicated in 46,XY sex reversal 9; myelodysplastic syndrome; and tetralogy of Fallot.

NR:

description
PREDICTED: zinc finger protein ZFPM2 isoform X2

GO: NA

KEGG:

id description
K17442 ZFPM2, FOG2; zinc finger protein ZFPM2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002633 True 3904 mRNA 0.46 3 23677942 23682594

Neighbor

gene id symbol gene type direction distance location
AMCG00002632 NA coding downstream 206396 23421798 ~ 23471546 (-)
AMCG00002625 NA coding downstream 641083 23033808 ~ 23036859 (-)
AMCG00002626 sdha,LOC107694085,LOC107729872,LOC105909048,LOC107751682 coding downstream 649595 23018946 ~ 23028347 (-)
AMCG00002627 NA coding downstream 665246 23000727 ~ 23012696 (-)
AMCG00002628 si:rp71-45k5.4,psma2,LOC108440756,LOC108425697,LOC107686300,LOC106570382,LOC107724313,LOC103023870 coding downstream 681422 22990253 ~ 22996520 (-)
AMCG00002634 NA coding upstream 95095 23777689 ~ 23787869 (-)
AMCG00002638 NA coding upstream 357747 24040341 ~ 24045879 (-)
AMCG00002639 rims2a,rims2,LOC104967056 coding upstream 369025 24051619 ~ 24065028 (-)
AMCG00002640 NA coding upstream 457966 24140560 ~ 24183507 (-)
AMCG00002641 NA coding upstream 513127 24195721 ~ 24211357 (-)
G124765 NA non-coding downstream 14370 23655984 ~ 23663572 (-)
G124669 NA non-coding downstream 678834 22996819 ~ 22999108 (-)
G124591 NA non-coding downstream 1024223 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 1079387 22597999 ~ 22598555 (-)
G124535 NA non-coding downstream 1239213 22436886 ~ 22438729 (-)
G124779 NA non-coding upstream 191084 23873678 ~ 23928150 (-)
G124873 NA non-coding upstream 728435 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 893571 24576165 ~ 24577131 (-)
G124975 NA non-coding upstream 1265556 24948150 ~ 24950358 (-)
G125036 NA non-coding upstream 1692286 25374880 ~ 25433728 (-)
G124719 NA other downstream 381827 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 485286 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 1775345 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 1999397 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 5636369 17933464 ~ 18041573 (-)
G124829 NA other upstream 578971 24261565 ~ 24261823 (-)
G124848 NA other upstream 609193 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 2584458 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 2600746 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 2930882 26613476 ~ 26664767 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location