G124719


Basic Information

Item Value
gene id G124719
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23085994 ~ 23296115 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU156319
CAGGCTGTCAGGCTGTGGGATCACAGAGGAAGGCTGTGCAGCCCTGACCTCAGCTCTCTGTTCAAACCCCTCAACTCTGAGAGAGCTGGATCTGAGCTACAATCGCCCAGGGGACTCAGGAGTGACAAAGCTCTCTGCTGGACTGAGGGATCCCAACTGTAAACTAGAGAAACTGCTGCTGTCAGGCTGTGGGATCACAGAGGAAGGCTGTGCAGCCCTGACCTCAGCTCTCTGTTCAAACCCCTCAACTCTGAGAGAGCTGGATCTGAGCTCCAATCGCCCAGGGGACTCAGGAGTGACGCTGCTCTCTGCCGGACTGAGGGATCCCAACTGTAAACTAGAGAAACTGCTGTAAGTAGAggctgtgtgattgtgtg
>TU156333
TGAGGCTTTACAGAGTAAGAATGGACACCTGGATCTTTTCCTCCGTTTCTTTTTCGGCATCTCGATGGAGTCCAATCAGACTCTCTTACGAGGCCTCCTGACACACAGCAGCTCACACAGAGAActactgacacagacacacagcagctcATGGAGAGGATGGATGTCAAGCACAATCAACAGCTGGTGGAGAGGATCAGAGAGCGTTTCACAGAGCATCCAGAAAACAGCTGATTACATAAAGAAGATGATCAGAAAGAGCCGCTCTCCAGAGAGATGCATCAACCTGTTCCACTGTTTAAATGAACTGAATGATAATTCTCTAGTGGAAGAAATCAAGAGCTTCCTGAGCTCAGGAAGTCATTCAGGAAGAAAGCTCTCATCTGAACAGTGGTCAGCACTGGTGTTTGTGCTGCTGACATCAGAAGAGTCGTTAGATGAGTTTGACTTGAGGAAGTTCAGCAGAACAGAAGAAGGCTGTGTGAAGCTGCTGCCAGTCATCAGGAGATCTAGAAGAGCTCTGCTGTCAGGCTGTGGGATCACAGAGGAAGGCTGTGCAGCCCTGGCCTCAGCTCTCTGTTCAAACCCCTCAACTCTGAGAGAGCTGGATCTGAGCTCCAATCGCCCAGGGGACTCAGGAGTGACGCTGCTCTCTGCCGGACTGAGGGATCCCAACTGTAAACTAGAGAAACTGCTG

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU156319 False 377 lncRNA 0.55 2 23138618 23296115
TU156333 True 697 TUCP 0.49 3 23085994 23153164

Neighbor

gene id symbol gene type direction distance location
AMCG00002625 NA coding downstream 49135 23033808 ~ 23036859 (-)
AMCG00002626 sdha,LOC107694085,LOC107729872,LOC105909048,LOC107751682 coding downstream 57647 23018946 ~ 23028347 (-)
AMCG00002627 NA coding downstream 73298 23000727 ~ 23012696 (-)
AMCG00002628 si:rp71-45k5.4,psma2,LOC108440756,LOC108425697,LOC107686300,LOC106570382,LOC107724313,LOC103023870 coding downstream 89474 22990253 ~ 22996520 (-)
AMCG00002617 NA coding downstream 99423 22971505 ~ 22986571 (-)
AMCG00002632 NA coding upstream 125683 23421798 ~ 23471546 (-)
AMCG00002633 zfpm2 coding upstream 381827 23677942 ~ 23682594 (-)
AMCG00002634 NA coding upstream 481574 23777689 ~ 23787869 (-)
AMCG00002638 NA coding upstream 744226 24040341 ~ 24045879 (-)
AMCG00002639 rims2a,rims2,LOC104967056 coding upstream 755504 24051619 ~ 24065028 (-)
G124669 NA non-coding downstream 86886 22996819 ~ 22999108 (-)
G124591 NA non-coding downstream 432275 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 487439 22597999 ~ 22598555 (-)
G124535 NA non-coding downstream 647265 22436886 ~ 22438729 (-)
G124434 NA non-coding downstream 1132323 21941177 ~ 21953671 (-)
G124765 NA non-coding upstream 359869 23655984 ~ 23663572 (-)
G124779 NA non-coding upstream 577563 23873678 ~ 23928150 (-)
G124873 NA non-coding upstream 1114914 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 1280050 24576165 ~ 24577131 (-)
G124975 NA non-coding upstream 1652035 24948150 ~ 24950358 (-)
AMCG00002596 NA other downstream 1183397 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 1407449 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 5044421 17933464 ~ 18041573 (-)
G123829 NA other downstream 5096529 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 5379705 17690008 ~ 17706289 (-)
G124829 NA other upstream 965450 24261565 ~ 24261823 (-)
G124848 NA other upstream 995672 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 2970937 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 2987225 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 3317361 26613476 ~ 26664767 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000725 si:ch211-196h16.5 coding NC_007112.7 CM002885.2 54865552 ~ 54889501 (+)