XLOC_000725 (si:ch211-196h16.5)


Basic Information

Item Value
gene id XLOC_000725
gene name si:ch211-196h16.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54865552 ~ 54889501 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001206
CACACACCTGCACGTGAAAGTGAAAGGAAAGTcagtctctgtcgccattttATGAAGACAGAAACATCGTCTTACGAATGTAGAAGTGGTGAGATTCCTTCAGTTCGGTTGTTGTGATGGATCATCGTGGACATCGAGATGAAAACCTGCCCAAAGGTAGACCTACATTTCCACACAGATCAAACCCTCCAGAGCCCAGcggtgtgtctatgaagagtgaccgGTCAATGCATCATCCACTCAAATTTAAGGGAAACACTGGGTTTAGAGTGAAACCTCCAGAGCCCAGcggtgtgtctatgaagagtgaccgGTCAATGCATCATCCACTCAAATTTAAGGGAGGCATTGATCCTGGGTTTAGAGTGAATCCTCCAGAGCCCAGcggtgtgtctatgaagagtgactgGTCAATGCATCATCCACTCAAATTTAGTGGAGGCATTGATCCTATGTTTAGGCCTCCTGAACCCAGTGTGTCTGAGAAGAGTGGCCAGTCTGTGGATCCTACTTTAAAGTTTAGTGTACACACTTGTCACGGCTCTAGCCATCGCAAACCCCTCCAGACATTCAGATCAAATCTGCTGAAGAAGTTTCAGTGTGTGTCTGAGGGAACAGCGAGAAATAAATCCCCAACACTGCTGAATGAGATCTACACAGAGCTCTACATCACAGAGGGAGACAGTGGAGAGATCAATAATGAGCATGAGGTGAGACAGATCGAGACTCAATCCAGGAGATCAACAACAGAGGACACACCGATCCAATGCAGAGACATCTTTACAGCTTTACCTGGACAACACAAAGCCATCAGAACTGTGCTGACGAAGGGAGTCGCTGGCATCGGGAAAacagtctctgtgcagaagttcatcctGGACTGGGCTGAAGAGAAGGAGAATCAGGACGTCCAGCTCATATTTCCACTTCCTTTCAGAGAGATCAACCTGATGAAGGACAGAACACTCAGTCTGGCAGATCTCCTGCATGTGTTTTTCCCTGAAACCAAAGAGATGGAGATATCCAGAGACGGATATAAAGTgttgttcatctttgatggtctggacgAGTGTCGTCTGTCTCTGGACTTTAACAGTGGAGTGAAACTGTGTGATATTTCTGAATCGGCCTCAGTGGAGGATCTGCTGATCAACCTGATTGTGGGgaatctgcttccctctgctctcatctggatcacctccagaccagcagcagcagatctcATTCCCTCTGCGTTTGTCCATCGACTGACGGAGGTACGAGGCTTCACGgaccctcagaaggaggaatacttCAGGAAGAGGATCAGAGATCAGAGACTGGCTGATGAAATAATCCAACATCTGAAGTCCTGCAGGAGCCTCTtcatcatgtgccacatcccagtgttCTGCTGGATCTCAGCCACTGTTCTGGAGGACATGATGAGGAGAACAGATATAGGAGAGATTCCCAAgactctgactgagatgtacacacacttcctGATCATTCAGACCAGCATCAGACATGAGAAGCACTATGAGAAGAAGCTGAAGGATGAGGAGATGATCCTCAAACTGGGGAAACTGGCTTTCCGGCAGCTGATGAAAGGCAACCTGATcttctatgaggaggacctgagaGAGTGTGGCATTGATGAGAGCGAAGCCTCCGTTTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGCTGGGCTTGTTTCAGGGGAAAGTCTTCTGCTTTGTTCATCTGAGCATTCAGGAGCATCTCGCAGCTCTTTATGTGCTGCTTTCATTCCTGCTGTACGAGAGAGATGAGCTCAGTGAAAACTTCAGATCAACACGTCCACATGAGTTCACATGTCACACAGTCTTTGACCTGCACCAGAGAGCCGTGGACAAGGCACTGCAGAGCAGAAATGGACATCTGGACCTCTTTCTCAGATTTCTTCTGGGTCTCTCATTGAAATCTAATCAGACACTCCTGAAAAATGTTCTGACACAGGTTGGAAACATCTCATACAGTCAAGAGGAAACAGTTGAGTacattaaaataagaataaaactgAATCCTTCACCAGAGAAATCCATCAACCTGTTCCACTGTTTAAATGAACTGGGTGATCATTCTCTCGTCAATGAAGTCCAGAAGTATGTCAGATCTGGAGATCTTTCAGGCAGCAGATTGTCCTCCTCTCAGTGGTCAGCGGTGGTCTTTATTTTGTTGACTTCAGAGCAGTTGGATGAGTTTAATTTAAGAAGATATTTAACAGACTCAGAACAccagacacaaacacaaaagCTCCAGACACCTGATGAAGTTCTTCAGAAGCTCCTGTCTGTAGTTGAAGCCTCCAGATCAGCTGTGTTGATTAATTGTGGCGTCTCAGAtgaaggttgtgctgctttggcttcagTTCTGAGATCAAAATCCTCAAACCTCAGAGAACTGAATCTGTCTGAGAATAAAGTAGGAGATTCAGGAGTGAAGCGGCTCTCTGCTGGACTGAAGGATcctcactgtaaactggagaaactGAGGTTGTGCCGATGTGGCGTCTCAGAtgaaggttgtgctgctttggTTTCAGTTCTGAGTTCAAACTCCTCAAACCTCAGAGAACTGAATCTGACTGAGAATAAAGTAGgagattcaggagtgaagctgctctctgcTGGACTGAAGGAAAACTCTAAACTGGAGAAACTGTGGTTGTTCATTTGTGGCGTCTCAGAtgaaggttgtgctgctttggcttcaATTCTGAGATCAAACTCGTCAAACCTCAGAGAACTGGATCTGACTGGGAATAAAGTAGgagattcaggagtgaagctgctctctgcTGGACTGAAGGATcctcactgtaaactggagaaactGACGTTGGATTTTTGTGGTGTCTCAGAtgaaggttgtgctgctttggcttcagctctgagatcaaactcCTCAAACCTCAGAGAACTGAATCTGTTTAATAATAATCTAGGAgtttcaggagtgaagctgctctctgatTTAAGAGATGATCCACATTATAAACTGGAGACACTGCATATCAGCTGGGGTTTTATATGTTGAATGTGGAGTCTCTACAGACACATTAAACTGTGCAGAAGTGAAGTGTCAGTGATCGTGCTGCTGGAGTTTATAAAGACTCTGCTGGACGACTAAACATCATCATCAGTGACTGAAACACTCCATCATTAATGTGCATCAGAGAAGAGGAAGAAATGCTGCAGGAACTGCTTTATTCATATCTGCTCACAGAGAAACTCAATGCTGCAGAATTAAAACACAAATAAGCGGATGCTCTTTCTGTTTCCTCCACCTGTGATGGAGCACGTCATGAAGAGAGAAAACCACGAGAAAACAGAGAAACTTTCTGTCTCTTCACACATGTGAGATGATTCTGGACAGTGTCGAGTGATTCAGCTTTCCTTCAGTCTGACTAAAGAGAAACAGCGGCATATTGAAGAGTGACATGATCCAGTTCAGGAGATAATTACTCAagattaaatcatttattcataattacaTCAGTCACCATGTCACATGCACACATGTAAATATCTCACTAGTCAGGCTGATTTACACCTTTCACCTTAACCTTCACATTTCAGACCTATATTGTAAATTGATGTACAGGACATTGTTATGTACAGATGTACAGTATTGTTATATGAAAATTgttaatatgaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgaaaaatgtcATGGTTTATAATATGAcagaaaatgtatttgttatttttatgtaactattgTGTTTATAATACATATACGTGCATcctctaagttttttttttttactgatattgTGCTCTATGTtgtaaactaaaatattaaatatacacaTTATGCAATGTCaacaattttaatatttcagtattctTGTATTCACTGTACTCATGAAAGTCTACCTAAACAgcaaatgatattaataaaagtgtGAATGAATCATATCAACCCAATTTTGTCAGCACACATTACGTATTGTGAACAGTTAACACGCtcaattttaaataaagcatttaaatcAC
>TCONS_00001207
ATGAAAGGCAACCTGATcttctatgaggaggacctgagaGAGTGTGGCATTGATGAGAGCGAAGCCTCCGTTTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGCTGGGCTTGTTTCAGGGGAAAGTCTTCTGCTTTGTTCATCTGAGCATTCAGGAGCATCTCGCAGCTCTTTATGTGCTGCTTTCATTCCTGCTGTACGAGAGAGATGAGCTCAGTGAAAACTTCAGATCAACACGTCCACATGAGTTCACATGTCACACAGTCTTTGACCTGCACCAGAGAGCCGTGGACAAGGCACTGCAGAGCAGAAATGGACATCTGGACCTCTTTCTCAGATTTCTTCTGGGTCTCTCATTGAAATCTAATCAGACACTCCTGAAAAATGTTCTGACACAGGTTGGAAACATCTCATACAGTCAAGAGGAAACAGTTGAGTacattaaaataagaataaaactgAATCCTTCACCAGAGAAATCCATCAACCTGTTCCACTGTTTAAATGAACTGGGTGATCATTCTCTCGTCAATGAAGTCCAGAAGTATGTCAGATCTGGAGATCTTTCAGGCAGCAGATTGTCCTCCTCTCAGTGGTCAGCGGTGGTCTTTATTTTGTTGACTTCAGAGCAGTTGGATGAGTTTAATTTAAGAAGATATTTAACAGACTCAGAACAccagacacaaacacaaaagCTCCAGACACCTGATGAAGTTCTTCAGAAGCTCCTGTCTGTAGTTGAAGCCTCCAGATCAGCTGTGTTGATTAATTGTGGCGTCTCAGAtgaaggttgtgctgctttggcttcagTTCTGAGATCAAAATCCTCAAACCTCAGAGAACTGAATCTGTCTGAGAATAAAGTAGGAGATTCAGGAGTGAAGCGGCTCTCTGCTGGACTGAAGGATcctcactgtaaactggagaaactGAGGTTGAGGTGTTGTGGCGTCTCAGAtgaaggttgtgctgctttggcttcagTCCTGAAATCAAACTCCTCAAACCTCAGAGAACTGGATCTGTCATGGAATAAAGTAGgagattcaggagtgaagctgctctctgcTGGACTGAAGGATcctcactgtaaactggagaaactGAGGTTGTGCCGATGTGGCGTCTCAGAtgaaggttgtgctgctttggTTTCAGTTCTGAGTTCAAACTCCTCAAACCTCAGAGAACTGAATCTGACTGAGAATAAAGTAGgagattcaggagtgaagctgctctctgcTGGACTGAAGGAAAACTCTAAACTGGAGAAACTGTGGTTGTTCATTTGTGGCGTCTCAGAtgaaggttgtgctgctttggcttcaATTCTGAGATCAAACTCGTCAAACCTCAGAGAACTGGATCTGACTGGGAATAAAGTAGgagattcaggagtgaagctgctctctgcTGGACTGAAGGATcctcactgtaaactggagaaactGACGTTGGATTTTTGTGGTGTCTCAGAtgaaggttgtgctgctttggcttcagctctgagatcaaactcCTCAAACCTCAGAGAACTGAATCTGTTTAATAATAATCTAGGAgtttcaggagtgaagctgctctctgatTTAAGAGATGATCCACATTATAAACTGGAGACACTGCATATCAGCTGGGGTTTTATATGTTGA

Function

symbol description
si:ch211-196h16.5 Predicted to be involved in intracellular signal transduction.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081029-8 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDARG00000069264

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001206 False 4105 mRNA 0.42 11 54865552 54889501
TCONS_00001207 True 1656 mRNA 0.44 7 54871725 54888464

Neighbor

gene id symbol gene type direction distance location
XLOC_000724 si:ch211-196h16.4 coding upstream 3964 54834119 ~ 54861588 (+)
XLOC_000723 nlrc6 coding upstream 80369 54766943 ~ 54785183 (+)
XLOC_000722 pi4k2a coding upstream 109996 54737353 ~ 54755556 (+)
XLOC_000721 NA coding upstream 164797 54698173 ~ 54700755 (+)
XLOC_000720 knop1 coding upstream 171540 54683655 ~ 54694012 (+)
XLOC_000726 zfyve27 coding downstream 232 54889733 ~ 54907823 (+)
XLOC_000727 golga7ba coding downstream 19394 54908895 ~ 54931913 (+)
XLOC_000728 r3hcc1l coding downstream 58558 54948059 ~ 54958463 (+)
XLOC_000729 NA coding downstream 69991 54959492 ~ 54985297 (+)
XLOC_000730 si:ch211-196h16.12 coding downstream 113082 55002583 ~ 55007223 (+)
XLOC_000715 NA non-coding upstream 252073 54611838 ~ 54613479 (+)
XLOC_000712 NA non-coding upstream 396263 54277243 ~ 54469289 (+)
XLOC_000713 NA non-coding upstream 461405 54401933 ~ 54404147 (+)
XLOC_000710 CABZ01067150.1 non-coding upstream 679396 54186039 ~ 54186156 (+)
XLOC_000733 CU467849.1 non-coding downstream 238964 55128465 ~ 55128579 (+)
XLOC_000735 NA non-coding downstream 295263 55184764 ~ 55191262 (+)
XLOC_000741 NA non-coding downstream 424973 55314474 ~ 55579436 (+)
XLOC_000742 NA non-coding downstream 437065 55326566 ~ 55343851 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G124719 NA misc CM030136.1 CM030136.1 23085994 ~ 23296115 (-)
mexican tetra (Astyanax mexicanus) G115736 NA unknown NC_035909.1 CM008312.1 34920701 ~ 35008942 (+)