XLOC_000729


Basic Information

Item Value
gene id XLOC_000729
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54959492 ~ 54985297 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003183
TAACTTCTCACCGGGTGATATTCTAGTTTTATACCGAGGCATTTTCTAAAGAATAGCGGTAAAACACAGACAAGCAATTAAATCGGACATTAAAGAGCGCGAATTTTAAAAACTGAGGCAGCGCGATTTGAAAAGTTTGTACGTTATCTTCCGTTGGTGCGACGCGAGTAAAACGTTTATCCAACGAACAAAACGAGACCAACTACGTTCACGAATGGATCACTTAATTGCCAGCAACCGTCTCTACAGTCGAAGAACTAAGGAAATGCGGGGCTTTTGGAGAGAGAAAAACATCTACACCGTGAGTTAAAAAGCTCATTGATGATACTGGCGGCGTGTTCACAGCGGTCGGGAGGACCCATTATATGAGCGATCTTATCTGGACCAGTACCGTCATCTTCAGAGAAGAGAAAAATGAAGAGTTATGCATTTTAATATGGACCACAAAACAAGTGGTTCCCACTCCCAGTACTTTCCTCATGTGCTCGTAGACCACGTAGGAGATGCTGACGGCAGGAATGACCTTCAGGAAGTTTGGAGCGATGCCTCGGTAGAGTCCCACAACGCCCTCCTGGGCCACGATACTTCTAAACAGGGTCAGCATGGACAACTGAGGAGCCCCCTTAATCGACGCTGGAGGACAACGAGAGGCAATCACATCAGAAACATGGAAGACCTTGAGTCTGTCGA
>TCONS_00003184
ctttgcttgttttatttaaaatttgtttaatttcatgtACACATTCTCTTGCATGCATTCAGTTacatattttagttttcattcaAAGGTAAATACACAGtagaacagcaaaaaaaaaaaaaaaaacagataatgaACAAACATGTTGTTGTTTATGTCAATGCAAGATGTCCGTGTTGGAAACCGTTTTTATTCAGGAGGCCCAGATTAAATCTGCAAATGATTTTTTCACAGTTTCCACACAGATATTGTGGAACAGGTGTAAACATGATGAAATACTTTGACCTTTTTGATAAACTGAAAGTTCTTTGTTAAGTACTAGTACTCTTTTACAGCTTAATTAAGGGGACGGATGTTCTCATTCAAGACAACACTTGATTGAATACAAAATTGGACACACCCACAAGTGCAGGCTGATGTCATCAATATTTTGGTCCGTTTTCCCAGAAAAAGGCTGGGAAATTCTAAAGCGTAATAAACTAGAAGTTTATTTTAGAAGTACAGCAGTGTATGTATGTGCTACTGGACAAACTAAAAGAAACAGAAATGTAATTTTGAGGCTTCGATTTAAAAACACCAGAAGTTTGCAGATTCCCAGTGGAAATCTTCATAGTAGAATAGCTCATTCTAGTCTATCTGAGTGTATCTGCTGAACTCTTAAGCAGTGATCCTCTACtctaaaaagttttttattagttctgtttcttttcataagaaaaaaaattacacaaaaaacacacacactctctctctctctctctctctctctctcatccatGAGTCCATAAGGCTTTCTGCTCCAAATGAAGGCTACAGCATCTCATGCACTGATGGTAACAGAAATATCAACTCCAAGGCTGCGTCCCAATTCAGATATGTACGTAATGTGTATTTGCTAAGTATGTAGTAAGACGTAAGACTACAATATTAATGGGTCATTAATTATGTATCGATacatataatacattatatgtacattttttgtcTAAAGCCCCCAATATGGCAAACGTCTTTTTCATTTAGGGGTAAAAACTAGTTTGAAAAACCTGAGCATTGGTAAGATCTAgatgatttaataaatacatgcagcacattttcttatatataaactaaaacatatatatatatatatataaaacacaaactTTCAACTAAATTACAGCAGCGTGAAAACACCAGTTAAGAAAACATGATATGATGTTTGTGGGTCGAAGGATGGATGGCTGcttttttcttcagaatatcttgttttgtgttcaccagaagaaaaaaacacttgATGAAAAGTCGAgagaggaaattttcattttagggtgaactatttctttaaccgGAGAAGGTTTTCAAGTCAAAGTAGGTGAAGCCACACAGCCACACCTACCTATTATGTACTAAGAATTGACCAATGGTAGATTGAGAGTGTTTACTAAGTGAAGtaaagcaaactgaaataaacTAACTTTATTTTGGCCTGATATTCGCTGAAATGACGTTATTTATTATTGGACTTAGCTTTAAGTATATTTGGgacattagcatcttgctaaactcataaataacattttttaaaatcacataCATTTAAGAACTACTGTGGCAACTTCGGCCTTGCATTCATCAATACATTtcttcatctgaaaaaaaaaaaaaaattcacaaaatgtcATCACACACAAGATTGGATGAGGGAAATATTAGCCAGAAAatgcatgcatggatggatgcatacTGTACTTCAAAAAATAATCCATTAAATAAGAATATCATCTGGTAAGGTCTTAATCATGAAACAAAAGCAGAATGAATTTCTGGGTAAATTCATTTTCATGATTTAACAGTTTACACGTTTTAGGAGTCAGTCCTTGTGTTTTGACACCACAGTATTTATGGAGGagagtatgcaaattgggacacaGTGCAAGTTTTTAGAATTTAAATTCTGGAATCTTCAGTTGAGAATAGTGCTGTGGTGAAAAAAACATTTGAGAAATAGGTGCTGTGTGGATTATGAGCTTTTCTAAATGAACTGGTATTAAATGTCTCTTAAATCAAtctgtagttcagtttttaacagctgatggtgctgtaggctagttttgaacagtaggcggtgctctaggctagttttgaacagcaaatGGAGtgctaggctagttttgaacagcagttggcgctctaggctagtttttaaacagcaaatggaGCTTTAGGATAATTGtgaacaacagatggcgctctaggctagttttggaCAATAGgtggtgttctaggctagttttgaacactCAAAGGAAGAGTTCTTGTGCGTTCTGTTTCAAGTTGGCTTTTATataatgaaattattataaaCAGCTCACTATGGACACGTCATTCGCTTCAACCTTCCCTAactttattgattattttaagttttatttgtaAAAGGTTTGTAAAACAGAGCCATCTGCtcttaaaaactagtctagagcaccaacTACAGTTAAAAACTAAccaatctactgttaaaaaccagcttagagcaccatctactgtcaaaaactagcctagagcgccatctactgttaaaaactaatctatctactcttaaaaactagccttgagcgcaATCTGCTCTTATAAACTAGTCTAAAGAGCCATCcactgtcaaaaactagcctagagcactatctgctgttataaactagtctagagtgccatctactgttaaaaaactAACTTACCTATTCTTAAAAaacagcctagagcaccatctactgttaaaaaactaacctagagcacaatctactgttaaacactagcctaaagcgccatctgctcttaaaaactagcctagagcgccatctgctcttaaaaactagcctagagcgccatctactgttaaaaaactagcctagagcacaatctactgttaaaaactaggctagagtgcaatctgctgttaaaaaccagcttagagcaccatctactgttaaaaaaactatcatagagcaccatctactattaaaaactagcctagagcgccatctactgttaaaagcTAGCGTAAAAAAAACCCTAACCCTAATCAATTCAAGAGAGAATAATGCATTTTGAAAGTCTCAGAATCAATGCAAAATCAATTTCTCGAAGGTTTCTCGCCACAGCTCTAGCTGAGAATTCCAAAACTCGTTTTCTTTCACTGGGATTTTGGAGCACACTGGGATTCAACACAGTATTAAACAGTAGGCCAGGCATATCACTAATAAACCATATGCGTTTCTCAAAACAGAGGCACTTTCAATCCATCTGTAAGCTCAAAGGGAGGAAGTTAGTTTATCGTTCATTCCCATTTGGTGTTCAGTGGGGCTGGACGATTAATCAATAGgcgattttcatgcacattttgtcagtaaagctggttcttATTACTTAACAGAGCCATGGTTCACTGACCAGCTATGCAGAATTGTGTTCAAAATTAAAACTCGATTTCATCTAATGATAATGACATTAAGATAATCGTtctatgataaaaataataatagatatttaTGTGGCTTCACAATGAACTACAGCTCTGTGTAGTAAATATTGCATGTGAAACTACCCTGTTTTAACCTAATAACTTCAGtcgagtgtttgaaataaatccttcTATGAGATGATTCAGTAGTCCTGCGTTTATTAGTCACACTGaatcaataaaagcagttaaatcttcTGTTTGTAATGCAAAGCAATGAGGATTTTCTGGGTTTCTTCTTCAGCACATTTGGAGTTATGTAAGATCGCCCTCTAGCCTTCggaggagatttactactgatcacacaaCCGTGCTTTCCAGACAAGATGTGCATGGCAATGGCAGCTTTTCAATTTCATTTCaataaatcgcccagccctagtgttCAGTAGTGTGTGCACtgggttaaacacacacacacacacacatacacacactacagtaCAGCACATGCTCACACAATCTTCccacacacacaagcactcatTTTACCGCGTCCACAGGAACGTACCCTGTAAACCTGAATATCAGGGCCCTGTTGATCAACAACACACATAAAAAACACACATGATGAACGGGCCTGGATCAGCACCTCGTAGATTCTGCatatttcagtgtttttcaaTCAGTTCCTCACAGATAGTTGATCATCACAACTCCAGTGCAGGGgattttttttaggtattttaggcttaaataaGCAAGTCTTTGACCTTTCCTTTCTTCTCTTGACATATAAAGGATGTAACTATAGTGtctgtttttttccctttataaacacacactcatgcagtCTTTCTCTCTCAGGTTCCCACTCCCAGTACTTTCCTCATGTGCTCGTAGACCACGTAGGAGATGCTGACGGCAGGAATGACCTTCAGGAAGTTTGGAGCGATGCCTCGGTAGAGTCCCACAACGCCCTCCTGGGCCACGATACTTCTAAACAGGGTCAGCATGGACAACTGAGGAGCCCCCTTAATCGACGCTGGAGGACAACGAGAGGCAATCACATCAGAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003183 False 690 lncRNA 0.46 4 54959492 54985297
TCONS_00003184 True 4521 lncRNA 0.37 2 54974195 54978775

Neighbor

gene id symbol gene type direction distance location
XLOC_000728 r3hcc1l coding upstream 1029 54948059 ~ 54958463 (+)
XLOC_000727 golga7ba coding upstream 27579 54908895 ~ 54931913 (+)
XLOC_000726 zfyve27 coding upstream 51669 54889733 ~ 54907823 (+)
XLOC_000725 si:ch211-196h16.5 coding upstream 69991 54865552 ~ 54889501 (+)
XLOC_000724 si:ch211-196h16.4 coding upstream 97904 54834119 ~ 54861588 (+)
XLOC_000730 si:ch211-196h16.12 coding downstream 17286 55002583 ~ 55007223 (+)
XLOC_000731 lgalsla coding downstream 95500 55080797 ~ 55089987 (+)
XLOC_000732 aftpha coding downstream 110017 55095314 ~ 55109914 (+)
XLOC_000733 CU467849.1 coding downstream 143168 55128465 ~ 55128579 (+)
XLOC_000734 mb coding downstream 152646 55137943 ~ 55145085 (+)
XLOC_000721 NA non-coding upstream 258737 54698173 ~ 54700755 (+)
XLOC_000715 NA non-coding upstream 346013 54611838 ~ 54613479 (+)
XLOC_000712 NA non-coding upstream 490203 54277243 ~ 54469289 (+)
XLOC_000713 NA non-coding upstream 555345 54401933 ~ 54404147 (+)
XLOC_000710 CABZ01067150.1 non-coding upstream 773336 54186039 ~ 54186156 (+)
XLOC_000735 NA non-coding downstream 199467 55184764 ~ 55191262 (+)
XLOC_000741 NA non-coding downstream 329177 55314474 ~ 55579436 (+)
XLOC_000742 NA non-coding downstream 341269 55326566 ~ 55343851 (+)
XLOC_000744 NA non-coding downstream 384220 55369517 ~ 55369839 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G7608 NA unknown CM030121.1 CM030121.1 44520914 ~ 44522213 (-)
tiger barb (Puntius tetrazona) G6425 NA non-coding NC_056699.1 CM032068.1 26787350 ~ 26790176 (+)