XLOC_000728 (r3hcc1l)


Basic Information

Item Value
gene id XLOC_000728
gene name r3hcc1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54948059 ~ 54958463 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001213
gaaGCATTTTTGAATGTGACGTCACGGCGCCGGTACGTCTCCAAACATCCGGTCATGGTTTCAACGGTTTGGCGAACTGAAAAATATTAAGACATCCTGATGGAGACCGAAGCAGCTCAGCCTGAACAAGGCTCCAAAACTGCTGTCCCGGCCCGAACTAAAAGGCCCACCATGGAAGTCTACGTTCCCAAGAAACGGCAGGCCGAGAAAACAGACAAACCTCAGTCAGACGGTGACAAGAAATCCAAACCCAGACCTCGATACACAGATAAAGCCCGCAAGAACAAGAAAGATAAAGCCAAAGTGAGCGAAACCCAAAACGGAGAAATTAAACCAGATGCTGGAGaacaaggaggaggaggagatacAGAAAACCAAAACACTGAACCAGAAAAAGATGAAGAGTCCACAGGAGACATGAACACCACATCCAGAACTGTGCACTCCCCAGAAGACTCGAGCAGTGTGCTGGAACATGATGACGAGGAGATGAAGGACGAAGAGGAGAACTGGGATTCGTTATTTAATGACGACGGAGACTGTCTGGACCCCCATTTGATGGAGGAGATGTCTCTAAAGGAAGGACGCAAGAAGCAGTCTGCACAGGACTCAGGCTTCGACTACTATAATTGGTCGCCGCAGGATGACGAGGAGGTGGAGCTTCGGGATGACGAGCTGTCACACATCATCGAGATTTATGATTTCCCAACCGAATTCAAGACGGAGGATTTGGTCAGATCCTTCAGCTCCTTCCAgcagAAGGGCTTTGACATCACGTGGATCGACGATACACACGCTCTTGGTCTGTTCTCCAGTCCTATCGCTGCTCGTGATGCTTTGAGGATGAAGAACCCCATGATGAAGGTCCGACCTCTGTCCAGCTCATCAAACGCCACTAAAGCCAAAGCGCGCAGCTGCTCCGattatcTGCTGCCGGCTAAAGAGCGTCCTCAGACGAGTGCGGCTTTGGCACGGCGGCTGGTCATCGGAGCTCTGGGCGTGAAGAGCAACCAGACCCGGGAAGAGCGAGAGGCAGAGAGGAACAAACTACAGCAAGCCAGAGAGCAAAAGCGTTTAGCCGCTAAGCAGCGTGAAGATGCCTGGGAGGGCAAGTGAAGatacagTTGTAGGAGCTTCACAGGTTCAAGAGACGCCTCGGTGGATCAGGACTACTGCCAAACCAGCATGGACTGAACCAAAGCCACAGGGACAGGGGCTCATCCAAACAGGGAGATTTTGTAATTTTTCTATCCTCTTGAAAGAACTTTTCCCCGTAAATGTTTGATTGTTATAGGGTTTGGTTTGGACCtgcaattttaatgtttttttttaaatgcaattttttttagagagagaatGTTTTATTGAGTAAATTAAACTAGACCATGGCAatataaatcagttttattttgtttttggatctttttttttttatttggacttTGTATATGCGTGAATCAGAAAAAAATCTGTCACATTTCATAGTAATGAagcaaaaataacatttatggGGAAAATTATTAAGAGCTCTGAACTGGTCAAGCATTACAGTAATGTTTTAACCCACAGTACCATACATTGTGGATTTTTCAGCTAAAACCTGCATTAAAGATCATTGTGCATATTATTTTTGTCAACCAAGGCTTTGTAAACCATCGGCACATTCTAATACCAAACTTCCTGTATATGTTATTTAGATGTAAA
>TCONS_00001214
ATGTCTCTAAAGGAAGGACGCAAGAAGCAGTCTGCACAGGACTCAGGCTTCGACTACTATAATTGGTCGCCGCAGGATGACGAGGAGGTGGAGCTTCGGGATGACGAGCTGTCACACATCATCGAGATTTATGATTTCCCAACCGAATTCAAGACGGAGGATTTGGTCAGATCCTTCAGCTCCTTCCAgcagAAGGGCTTTGACATCACGTGGATCGACGATACACACGCTCTTGGTCTGTTCTCCAGTCCTATCGCTGCTCGTGATGCTTTGAGGATGAAGAACCCCATGATGAAGGTCCGACCTCTGTCCAGCTCATCAAACGCCACTAAAGCCAAAGCGCGCAGCTGCTCCGattatcTGCTGCCGGCTAAAGAGCGTCCTCAGACGAGTGCGGCTTTGGCACGGCGGCTGGTCATCGGAGCTCTGGGCGTGAAGAGCAACCAGACCCGGGAAGAGCGAGAGGCAGAGAGGAACAAACTACAGCAAGCCAGAGAGCAAAAGCGTTTAGCCGCTAAGCAGCGTGAAGATGCCTGGGAGGGCAAGTGAAGatacag

Function

symbol description
r3hcc1l Predicted to enable nucleic acid binding activity. Orthologous to human R3HCC1L (R3H domain and coiled-coil containing 1 like).

GO:

id name namespace
GO:0035145 exon-exon junction complex cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4156 Predicted to enable nucleic acid binding activity. Orthologous to human R3HCC1L (R3H domain and coiled-coil containing 1 like).

Ensembl:

ensembl_id ENSDARG00000089243

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001213 False 1704 mRNA 0.45 8 54948059 54958463
TCONS_00001214 True 557 mRNA 0.54 5 54952540 54957798

Neighbor

gene id symbol gene type direction distance location
XLOC_000727 golga7ba coding upstream 16146 54908895 ~ 54931913 (+)
XLOC_000726 zfyve27 coding upstream 40236 54889733 ~ 54907823 (+)
XLOC_000725 si:ch211-196h16.5 coding upstream 58558 54865552 ~ 54889501 (+)
XLOC_000724 si:ch211-196h16.4 coding upstream 86471 54834119 ~ 54861588 (+)
XLOC_000723 nlrc6 coding upstream 162876 54766943 ~ 54785183 (+)
XLOC_000729 NA coding downstream 1029 54959492 ~ 54985297 (+)
XLOC_000730 si:ch211-196h16.12 coding downstream 44120 55002583 ~ 55007223 (+)
XLOC_000731 lgalsla coding downstream 122334 55080797 ~ 55089987 (+)
XLOC_000732 aftpha coding downstream 136851 55095314 ~ 55109914 (+)
XLOC_000733 CU467849.1 coding downstream 170002 55128465 ~ 55128579 (+)
XLOC_000721 NA non-coding upstream 247304 54698173 ~ 54700755 (+)
XLOC_000715 NA non-coding upstream 334580 54611838 ~ 54613479 (+)
XLOC_000712 NA non-coding upstream 478770 54277243 ~ 54469289 (+)
XLOC_000713 NA non-coding upstream 543912 54401933 ~ 54404147 (+)
XLOC_000710 CABZ01067150.1 non-coding upstream 761903 54186039 ~ 54186156 (+)
XLOC_000735 NA non-coding downstream 226301 55184764 ~ 55191262 (+)
XLOC_000741 NA non-coding downstream 356011 55314474 ~ 55579436 (+)
XLOC_000742 NA non-coding downstream 368103 55326566 ~ 55343851 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000303_00237281_00241353 R3HCC1L coding CI01000303 null 237281 ~ 241978 (+)