XLOC_000742


Basic Information

Item Value
gene id XLOC_000742
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 55326566 ~ 55343851 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003220
AAGCGAGTGACTCCATCAGCAGAGCAAACCAGCAAAGAACCACAACCACAGCACAGTGCGGTGGAGCCTCCTGAAGTCTCCTACATGACCCTTGACCCCAATTCCACATGCTCTGAATACAACACACTGGATATTATGAAGAGATCCAGTGAAAACACGAAGAGCTCTGATGGACAAGACTCAGATTATTATAATATTGTCAACTGAATGTTAAACTTTGTCTATTTGTTTTGAGAATCAATGTGTTGTTGATTTAAAACAACTTCAGAGATTTAAATTCATCAATCTAgtgcattttatatttaaaaataatggacAAGAGGATTTGCATTTCCAGCTTTGCACATAACCAGCAACCGCCTGCTTGTGAAAGACTCCAGCATTGCTTAACAAGTGTCTAGTAAATGAATACTGCGGAAATAACTCAACACAAGATGCCGTGTGTTCTGATGGCATATTAATACTTCAAGGATggctttgttttttaaaaatcctaaaatCTGTAGAggaataaaaaatgcttaatACTTAAACTTGTTCgaaacattattg
>TCONS_00003221
CCACAACCACAGCACAGTGCGATTATGAAGAGATCCAGTGAAAACACGAAGAGCTCTGATGGACAAGACTCAGATTATTATAATATTGTCAACTGAATGTTAAACTTTGTCTATTTGTTTTGAGAATCAATGTGTTGTTGATTTAAAACAACTTCAGAGATTTAAATTCATCAATCTAgtgcattttatatttaaaaataatggacAAGAGGATTTGCATTTCCAGCTTTGCACATAACCAGCAACCGCCTGCTTGTGAAAGACTCCAGCATTGCTTAACAAGTGTCTAGTAAATGAATACTGCGGAAATAACTCAACACAAGATGCCGTGTGTTCTGATGGCATATTAATACTTCAAGGATggctttgttttttaaaaatcctaaaatCTGTAGAggaataaaaaatgcttaatACTTAAACTTGTTCgaaacattattg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003220 False 552 lncRNA 0.37 4 55326566 55343851
TCONS_00003221 True 441 lncRNA 0.34 2 55326605 55343851

Neighbor

gene id symbol gene type direction distance location
XLOC_000740 si:ch211-286b5.8 coding upstream 15863 55304374 ~ 55310703 (+)
XLOC_000739 zgc:172106 coding upstream 27393 55293424 ~ 55299173 (+)
XLOC_000738 si:ch211-286b5.6 coding upstream 39306 55279124 ~ 55287260 (+)
XLOC_000737 BX284640.1 coding upstream 50753 55264712 ~ 55275813 (+)
XLOC_000736 si:ch211-286b5.2 coding upstream 79313 55239160 ~ 55247253 (+)
XLOC_000743 si:ch211-286b5.9 coding downstream 4686 55348537 ~ 55353978 (+)
XLOC_000744 NA coding downstream 25666 55369517 ~ 55369839 (+)
XLOC_000745 NA coding downstream 26287 55370138 ~ 55477135 (+)
XLOC_000746 NA coding downstream 41341 55385192 ~ 55385451 (+)
XLOC_000747 NA coding downstream 48529 55392380 ~ 55393032 (+)
XLOC_000735 NA non-coding upstream 135304 55184764 ~ 55191262 (+)
XLOC_000733 CU467849.1 non-coding upstream 197987 55128465 ~ 55128579 (+)
XLOC_000729 NA non-coding upstream 341269 54959492 ~ 54985297 (+)
XLOC_000721 NA non-coding upstream 625811 54698173 ~ 54700755 (+)
XLOC_000715 NA non-coding upstream 713087 54611838 ~ 54613479 (+)
XLOC_000748 NA non-coding downstream 93721 55437572 ~ 55439275 (+)

Expression


Co-expression Network