XLOC_000744


Basic Information

Item Value
gene id XLOC_000744
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 55369517 ~ 55369839 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002882
CTTTAACTCCCGTCACAGTGGCCGATACTACTGTGAGGCTGAGAATAAATATGGCTCTCAGAGATCAGAGTCTGTTTCAGTCACTGAAGGGGTTCAGAGATCTGCTCTGCTCACACTTACTGGGGTTGTGGCGGGATGTGGAGGAttgatcttcatcatcatcatcattattgtgtTCATATGGTGAGTGCATTTTGAGCAGATCCTGCATTAAAGGCTGTTTCAAAATGAACATGAATACAGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002882 True 245 lncRNA 0.44 2 55369517 55369839

Neighbor

gene id symbol gene type direction distance location
XLOC_000743 si:ch211-286b5.9 coding upstream 15539 55348537 ~ 55353978 (+)
XLOC_000742 NA coding upstream 25666 55326566 ~ 55343851 (+)
XLOC_000740 si:ch211-286b5.8 coding upstream 58814 55304374 ~ 55310703 (+)
XLOC_000739 zgc:172106 coding upstream 70344 55293424 ~ 55299173 (+)
XLOC_000738 si:ch211-286b5.6 coding upstream 82257 55279124 ~ 55287260 (+)
XLOC_000745 NA coding downstream 299 55370138 ~ 55477135 (+)
XLOC_000746 NA coding downstream 15353 55385192 ~ 55385451 (+)
XLOC_000747 NA coding downstream 22541 55392380 ~ 55393032 (+)
XLOC_000748 NA coding downstream 67733 55437572 ~ 55439275 (+)
XLOC_000749 CR788255.1 coding downstream 83053 55452892 ~ 55453752 (+)
XLOC_000735 NA non-coding upstream 178255 55184764 ~ 55191262 (+)
XLOC_000733 CU467849.1 non-coding upstream 240938 55128465 ~ 55128579 (+)
XLOC_000729 NA non-coding upstream 384220 54959492 ~ 54985297 (+)
XLOC_000721 NA non-coding upstream 668762 54698173 ~ 54700755 (+)
XLOC_000758 NA non-coding downstream 309073 55678912 ~ 55679447 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1422659 LOC106591490 non-coding NC_048581.1 CM023235.2 15453274 ~ 15458726 (+)