XLOC_000747


Basic Information

Item Value
gene id XLOC_000747
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 55392380 ~ 55393032 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003225
TGTTAAGAGGAGGAGAGCAGCTGGAAGTGAAGCTGTGGAGCAAAAGCAGGTGAGAAACACACTCCTCCATCTACAGCTGCAGTTCAATATGCttgtgtgtttacactgaattataaacacagatgtgtgtgtgtgtgtgatgcagtaTAAGTGTAGAAATGTTTCTCTATAGAGCGCTGACTCCACTGATGATACGTACACAGCTCTGGATCCAGCGTCCAGAAGATCTGCTGACGTTTACAGCACAATCCCAGTCAGTAAATGTCTGCAACACTTTTCCAGTCAGATTGATCAGATCCAGATAAACACAGGCTGATGTGTTCATGTGTTTCTCTCACAGTCTGTCGGCTCCAGAGCTCCTGATGATGAGACCTACACGGCTCTTGAGCTTCAGTCCAGATCTTCTGAATATGAGACTCTACATGTAGCAGGAGCTTCAGCAGATCCACATTAAACTCTCCTCGCTGTATTACTGCTCATATACAGGCAAATACTGAAGCTCCTCAGAAACTGATCATCATTAGAGCTCATCAACATCTGACTGCTCATAAACACATATTAGACTTTATTCACACAGTAGGATTCTTCTGCTTATGCAAACACAGTTTAGGATAAAATATAGCATTTATATTAGATTTATATTAGATTTTAGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003225 True 653 lncRNA 0.42 1 55392380 55393032

Neighbor

gene id symbol gene type direction distance location
XLOC_000746 NA coding upstream 6929 55385192 ~ 55385451 (+)
XLOC_000744 NA coding upstream 22541 55369517 ~ 55369839 (+)
XLOC_000743 si:ch211-286b5.9 coding upstream 38402 55348537 ~ 55353978 (+)
XLOC_000742 NA coding upstream 48529 55326566 ~ 55343851 (+)
XLOC_000740 si:ch211-286b5.8 coding upstream 81677 55304374 ~ 55310703 (+)
XLOC_000748 NA coding downstream 44540 55437572 ~ 55439275 (+)
XLOC_000749 CR788255.1 coding downstream 59860 55452892 ~ 55453752 (+)
XLOC_000750 adgre9 coding downstream 85621 55478653 ~ 55515184 (+)
XLOC_000751 adgre16 coding downstream 142795 55535827 ~ 55540577 (+)
XLOC_000752 adgre15 coding downstream 170500 55563532 ~ 55574266 (+)
XLOC_000735 NA non-coding upstream 201118 55184764 ~ 55191262 (+)
XLOC_000733 CU467849.1 non-coding upstream 263801 55128465 ~ 55128579 (+)
XLOC_000758 NA non-coding downstream 285880 55678912 ~ 55679447 (+)
XLOC_000760 NA non-coding downstream 321886 55714918 ~ 55729126 (+)
XLOC_000761 NA non-coding downstream 324546 55717578 ~ 55721415 (+)
XLOC_000768 NA non-coding downstream 1023606 56416638 ~ 56556305 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01104888_00000013_00000335 NA coding CI01104888 null 13 ~ 688 (+)