XLOC_000736 (si:ch211-286b5.2)


Basic Information

Item Value
gene id XLOC_000736
gene name si:ch211-286b5.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 55239160 ~ 55247253 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001227
GGTTCCGTGAGGAAGAATAAGCTGCCTGTTATTAAGTTTTTGCATACGAGAGTCATAAAAACAGAGGTAAACAGAGATCTGCACTGCTGTCAATGAAGATTCAGCACTTCCTGCTTTTCGCCAGGTTTCTCATAGCAACGGGAGCCTCGCGCTTTACGGCACACAGGAACGCCCAACGGCTCCGGTACTTGTAGTTCAACCGACAGTCTGTCAATCTGAATCTGGACTGAAACGAGAAAATGCccaaaagaaaatcaaagacTACAGTGCTCAAAGCACCCAAGAGGACACAAACCAGAGCAAAGCAACAGAAAAGTGCTGAGGAAACAAATCTGCAGTCTGTTGAAGAAAATCAGACGTCAAAATCAGAAAACAACTCCCACAATGCATCATGCTCATACAAGCTGGATGAGCCTCAAGTTGAACATAGTGCATTACAAGTAATTCAGACAACAGAATTCCCCAATGATCCCGGCTGTTCCCTGGAAATAAAAACAAGCCgcgatgataatgatgatgatggaaaTAACACAAATCCACCTGAGGTCTCTCATGAGAATGAACAAACTGCAGTGATCACAATGCAAACACCAGATCCTGAAAACAGTGCCAAATACATCCTCTCCAAACCTATAAATGTGCAAACAGCCAATGTAGATCAGTGTAACACAGAGCTGGATGATGACGAGAGTGAAAACACAAACAATTCAAACCACGAGTCTCAGAAGATTCCAGACTTTCACTCTGAATTACTTGACTTATCATCAGACGAAACTGGGATTAAATTGCCACATGAGGATGTTATTGCATCCAAAATGGCGGAGCAATTGGGATCTTCAGATATCATAGCTCAGACCAAAGATGAAGGTTCTGCAGATCCTTTAgtaaagaggaaaaaaagaaagagaatggGAATGTGCAGGCTTGGAGAAAGAAAGAGGATGGTTAAGGAACCGATGACTAGCAGAGGACAGGAAGACGAGACAAGAGAAGTTATCAGTGAGGATGGTTTAAGTAAAGTTAACTCCAACAATTCTTTCAAAAATGAGAGCAATACAGAGATGGAAATTGCAGAGATCTCCTCCCTAAACGCTTGCTCTGTTGAAGATGTACAACCAGATGTTCAGCATGGAAATGAACTTCAGATATTGGTTGAAAGCATGTCTAGGGTGGAAGAAATTACACATAAAGTTGACCCAACAACCATGCATCATGCTGATTCTGATGCTCTTGAGCGAAACAAAGTTGAATGCATGGATCATGGTGTTCATGAAGGAAATATTAGAGTAGATCCACTGTTGTGCGCTGAAATGTGCAAGGAAATCACAGCTCAGATTGGTAGCATGGCAAATGTAGATCTTGAGGAGGAGTCTACCAACGTTTTGGATGAAGAAGCAGTTTTAAAAGAGGCTGAAGCTTCAGGATCTACTTCTGAGGTTGCTAATTATTTTGAACAACATGTAAGCGGTGAACCTTCCAGTCCCCATGGATGTGACAAGTATGCCTGTGTTAGTGAGCAGTGTGAGGAGTTCAATGATTTCATAGATCATAAGACGTTAATGAGTGATATAGGAGAGATGTGCGAGTCTTTGGACGATGCTCTGGTTTCTGCTACAGTATCTGCTGAGAGCAAAGCAAACTGTGAGGAAAGAAGCACGTGGAGTTTATCTTTGCCTCCAGCTCCACCTGGTGGTGAAGATAAAGATGTGCAATCAGTTTCAGAGAGTGATGCTTATAGACCTGCTGATGAAGAAGCTCCCTCCAGCCCTTTATCCATACAATCCCTGACTGACTCCCAGCTCAACAACATCCCCCTGAGTTTGGAGGATTTCCCCACCTCTGAAGCCTCTGGTGGTCTGGAAGACGCCTCAGAGCTGATGTCCCGTCTAATAAGAGACCTCTCCGCTCTAAATCAGATAATGATGGATGCACAGAggagaattggatttgtgcacaGAGGCAGAATACCACCAAGACCACCGCGCCGCAGCTATTACGGCCCGCCACACTCTGGCAAATAACCTTCAGTATCTTAACATGTTCTGCTAGCTACAGATTCGACTTTACAGAATAAAACTTAAACTAGATGTTTTTATAAACCAAATACTGGATAGTTTGAGTAATTTATCTGTAGTAAGTGTTAGCAATCTTGTTCATAGCTGATCAGTTATACTTTTGCTATTTGTTCATGGTTTTATTAAAGTAGTTTTTCCCCCATGTGAGGTTCAAGTAAAGTAAACATCATTACGCTGTCTATTAGAGTGTGTGCCCCCTAAACTGTAGGGTCATTACCTTAGCAACCAGTCTTGAGAGTTGTTTCAGCTAGCCG
>TCONS_00001228
ATGCccaaaagaaaatcaaagacTACAGTGCTCAAAGCACCCAAGAGGACACAAACCAGAGCAAAGCAACAGAAAAGTGCTGAGGAAACAAATCTGCAGTCTGTTGAAGAAAATCAGACGTCAAAATCAGAAAACAACTCCCACAATGCATCATGCTCATACAAGCTGGATGAGCCTCAAGTTGAACATAGTGCATTACAAGTAATTCAGACAACAGAATTCCCCAATGATCCCGGCTGTTCCCTGGAAATAAAAACAAGCCgcgatgataatgatgatgatggaaaTAACACAAATCCACCTGAGGTCTCTCATGAGAATGAACAAACTGCAGTGATCACAATGCAAACACCAGATCCTGAAAACAGTGCCAAATACATCCTCTCCAAACCTATAAATGTGCAAACAGCCAATGTAGATCAGTGTAACACAGAGCTGGATGATGACGAGAGTGAAAACACAAACAATTCAAACCACGAGTCTCAGAAGATTCCAGACTTTCACTCTGAATTACTTGACTTATCATCAGACGAAACTGGGATTAAATTGCCACATGAGGATGTTATTGCATCCAAAATGGCGGAGCAATTGGGATCTTCAGATATCATAGCTCAGACCAAAGATGAAGGTTCTGCAGATCCTTTAgtaaagaggaaaaaaagaaagagaatggGAATGTGCAGGCTTGGAGAAAGAAAGAGGATGGTTAAGGAACCGATGACTAGCAGAGGACAGGAAGACGAGACAAGAGAAGTTATCAGTGAGGATGGTTTAAGTAAAGTTAACTCCAACAATTCTTTCAAAAATGAGAGCAATACAGAGATGGAAATTGCAGAGATCTCCTCCCTAAACGCTTGCTCTGTTGAAGATGTACAACCAGATGTTCAGCATGGAAATGAACTTCAGATATTGGTTGAAAGCATGTCTAGGGTGGAAGAAATTACACATAAAGTTGACCCAACAACCATGCATCATGCTGATTCTGATGCTCTTGAGCGAAACAAAGTTGAATGCATGGATCATGGTGTTCATGAAGGAAATATTAGAGTAGATCCACTGTTGTGCGCTGAAATGTGCAAGGAAATCACAGCTCAGATTGGTAGCATGGCAAATGTAGATCTTGAGGAGGAGTCTACCAACGTTTTGGATGAAGAAGCAGTTTTAAAAGAGGCTGAAGCTTCAGGATCTACTTCTGAGGTTGCTAATTATTTTGAACAACATGTAAGCGGTGAACCTTCCAGTCCCCATGGATGTGACAAGTATGCCTGTGTTAGTGAGCAGTGTGAGGAGTTCAATGATTTCATAGATCATAAGACGTTAATGAGTGATATAGGAGAGATGTGCGAGTCTTTGGACGATGCTCTGGTTTCTGCTACAGTATCTGCTGAGAGCAAAGCAAACTGTGAGGAAAGAAGCACGTGGAGTTTATCTTTGCCTCCAGCTCCACCTGGTGGTGAAGATAAAGATGTGCAATCAGTTTCAGAGAGTGATGCTTATAGACCTGCTGATGAAGAAGCTCCCTCCAGCCCTTTATCCATACAATCCCTGACTGACTCCCAGCTCAACAACATCCCCCTGAGTTTGGAGGATTTCCCCACCTCTGAAGCCTCTGGTGGTCTGGAAGACGCCTCAGAGCTGATGTCCCGTCTAATAAGAGACCTCTCCGCTCTAAATCAGATAATGATGGATGCACAGAggagaattggatttgtgcacaGAGGCAGAATACCACCAAGACCACCGCGCCGCAGCTATTACGGCCCGCCACACTCTGGCAAATAA
>TCONS_00001229
tgtctattttcaTTGTTTATTGTGTTCAGTTTGGAGGATTTCCCCACCTCTGAAGCCTCTGGTGGTCTGGAAGACGCCTCAGAGCTGATGTCCCGTCTAATAAGAGACCTCTCCGCTCTAAATCAGATAATGATGGATGCACAGAggagaattggatttgtgcacaGAGGCAGAATACCACCAAGACCACCGCGCCGCAGCTATTACGGCCCGCCACACTCTGGCAAATAACCTTCAGTATCTTAACATGTTCTGCTAGCTACAGATTCGACTTTACAGAATAAAACTTAAACTAGATGTTTTTATAAACCAAATACTGGATAGTTTGAGTAATTTATCTGTAGTAAGTGTTAGCAATCTTGTTCATAGCTGATCAGTTATACTTTTGCTATTTGTTCATGGTTTTATTAAAGTAGTTTTTCCCCCATGTGAGGTTCAAGTAAAGTAAACATCATTACGCTGTCTATTAGAGTGTGTGCCCCCTAAACTGTAGGGTCATTACCTTAGCAACCAGTCTTGAGAGTTGTTTCAGCTAGCCG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-251 No description available

Ensembl:

ensembl_id ENSDARG00000096514

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001227 False 2329 mRNA 0.43 7 55239160 55247253
TCONS_00001228 False 1782 mRNA 0.43 6 55239710 55246945
TCONS_00001229 True 539 lncRNA 0.41 2 55246332 55247253

Neighbor

gene id symbol gene type direction distance location
XLOC_000735 NA coding upstream 47898 55184764 ~ 55191262 (+)
XLOC_000734 mb coding upstream 94075 55137943 ~ 55145085 (+)
XLOC_000733 CU467849.1 coding upstream 110581 55128465 ~ 55128579 (+)
XLOC_000732 aftpha coding upstream 129246 55095314 ~ 55109914 (+)
XLOC_000731 lgalsla coding upstream 149173 55080797 ~ 55089987 (+)
XLOC_000737 BX284640.1 coding downstream 17459 55264712 ~ 55275813 (+)
XLOC_000738 si:ch211-286b5.6 coding downstream 31871 55279124 ~ 55287260 (+)
XLOC_000739 zgc:172106 coding downstream 46171 55293424 ~ 55299173 (+)
XLOC_000740 si:ch211-286b5.8 coding downstream 57121 55304374 ~ 55310703 (+)
XLOC_000741 NA coding downstream 67221 55314474 ~ 55579436 (+)
XLOC_000729 NA non-coding upstream 253863 54959492 ~ 54985297 (+)
XLOC_000721 NA non-coding upstream 538405 54698173 ~ 54700755 (+)
XLOC_000715 NA non-coding upstream 625681 54611838 ~ 54613479 (+)
XLOC_000742 NA non-coding downstream 79313 55326566 ~ 55343851 (+)
XLOC_000744 NA non-coding downstream 122264 55369517 ~ 55369839 (+)
XLOC_000745 NA non-coding downstream 122885 55370138 ~ 55477135 (+)
XLOC_000746 NA non-coding downstream 137939 55385192 ~ 55385451 (+)

Expression


Co-expression Network