XLOC_000732 (aftpha)


Basic Information

Item Value
gene id XLOC_000732
gene name aftpha
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 55095314 ~ 55109914 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001219
CTCGGAAAAGAgcaggatacacacacacacattcacacacacatacacacaggaaAAGAGgcggtgtgtgtttttgttgtgtCTGTATGTGGAGCTCCAGATGCTCGCCGGGATGACGGGATTCGCCACTCCGGACTCCTGAGGTGTGAGCTGTGCCGTGTGTTTCTGCTCAAGGCCTGATGGAGCCTGATGTGATTCGCATCTACTCCTCCTCTCCGCCGCCGATGGAGGACGCTGGCGAGGACGAGGAGGACGAATTCAGCGACTTCACCGGCGTCCCGAACAGCACCAGCTTCTCAGAGTTCGACACGCCGACCACCTTCAACCAATCTCAGGCCCTGAACGCCACCTCGCCACCAGAGCTGCTGAGCAATGGACGGATCGTGGGTCTGTCTTCGCAATCCGCAGGGTCTACCAAGGCTAACGGCGTTGCACCTGGCGGGGGCCAGACTGGCATGCCAAATGGCAGAACGGTTAGTGTTGAGGAACTCAAAAAGCTGACCGAGCATCAAGCTCACATCACATCCCTGGAGTTTCCCACCAGCTCTCGAACTGACAATGACTGCAATGGCACTGTTGAAGTGCTTACGAACGGGTTTGCAAGCTTGGAGCAAGCATCAACGCCACACAAAAACAACGAATCTGACGACGATTTTGCAGATTTTTCTGCTTTTTCAAATGCTGATCACGACCAGCCTTCAAATACAGACTGGGAGCTTTCCAATCAAGGGTGTAGAGTGGCTCAGAACGACGTTAGCGACAGTGTTGAACTTTCCAATCAAGGGAGTAGATTAGCTCAGAATGACGTTAGCGGAGAGTGTGAAGATAGTATAGAAGCGGTTTCAAAAATCACAGGGTTTGAACTCCCTTCAGAAAGCTCTGAAGGTCTCAGCAATGGGGACTTGGGTTTTCATGAGGGATCAGATTTAGATCAAAGAGATCTAGAAACTAATACTACTGAATACGTTAGCACATCGCTAACTCTTAACGGCGTTGCTCGAAGCGAGAGCGATGACAATAGCGTGTCACCTAATGGTGAGAGATGTAGCGGAGGACAATCAGACGAGAAAGGCTCTGAGACTGAAGAAACCGAAACTGAGACCTCCTTCGGTCGGCCGCTGTCCACAGAGGCGCTCGAAGAGTTCGGCGACTTTAGCACGACGGGATCCGTACCATCACCTCCTCTTCAGGAGGAGACCGCCACACCTGCTGACCACAGCCAGCTAGTCGAGGACGACGACGAGGATTTCGGAGACTTCGGAGACTTTGGAGATGCCAACGCATTTAGTGCAGGTGGTTTTGCAGATTTTGACCAGCAGGGGGCGGAGACGCAAGTCACTCAGCCTGAAGCGGCCGCAGAGAAAACTGAAGATGACGAATTTGGTGATTTTGACACATCAAAAGAATTTAGTAAAACGGATTTGCCAGCTGAGGAGGCCACAACGTCTGCGGACTTTCCTGGAAGTGACAGTTTTGCGGATTTTAGCTCCGCACAGGGGAACGATGGCGCCGATGACGGAGGTTGGCAAGCGTTTTCTGAGCCGGATCAGAGCCAAAATGGAGAGGAATCGTGGGCAACATTTGAGCAGGCGCAGGATGGAGCATGTGCTCAAATGAGTGGAGATAAATGGCAGCCTGACACAGCACCTCCTACTGGTGTGGAGGAGCGCAAAAGTTGCACAACGGCGGCACTGGTCAGCCGTCTGGAGAAGATCTTCCAGGTCAGTTTCGAGCTGGTTGTGTCTCCCCAGGTGGAGGATGAGGTGAACACACTCCACAGCTTCCTCAAACCTCCATCAGAAGAGCAGGACAGAGACCGAGGACAGACCAGCGGGGCGGTGCGGGACGTGTGGCAGCAGCTGCAGGATGTGAATAATGCCTTCGGTCTACGATATCAGTGGGGCGGCTCTCACACCAATAAAGCTCTGCTCTGCTCTCTGGGTATCGACACTAGAAATATACTGTTTACAGGCCATAAAAAGCAGCCTGTGATTGTGCCAATGTACGCTGCCAGTCTGGGGATGCTGGAGCCCACAAAAGAGCCTGTGAAGCCGGTGTCTGCTGCCGAAATGATCGCCTCAATAGCACAATCTCCTTCAGTCGCCACAGAGTTGAGCTCCTGTCCACCGGACAGCACACAGgaGTCTCTTCCTCCTGTTCAGTTTGACTGGAGCAGCAGTGGCCTTACCAACCCTCTGGACGCGAGTGGAGGCTCGTCTCTGCTCAACCTCGATTTTTTCGGCCCAGTGGATGAATCGCCCTCCGGCACGGCCACCTCTATTCCAGgtgttgaCCCAGAGCTGTATGAGTTGACCCAGGTAAAGCTGGAGGTCAGCGGGGGCAGCAGTCGAGTGGTGGATGCATTTGCTCGCCTCATGTCGACTGTAGAGAAGACCAGCACCTCCACCAGcagaaAGCCAGTGCCGAAGGAGGAGAATCTGAGCCCGGAGGCTCAGCGGGTGATCTCAGGCCTGCCGGATCTGTCCTTCATGCAGGCTAAAGTGCTGATGTTTCCCTCCACACTGACTCCTCTCCTGCCCTCGTCCTCTACGCCCGACTGACGCGCTCTTTTCCTCTCTTTCATTGTGTATCGCTCTCCAGCTCCACAATATTCGACCCCGTCTATGATTTTAATGCCATCCTTTCAGTTCTCTAGCTCTCGTTCCTCATTCTGCCCGTTTTTAAGTTCAAATACATCGTCCGGTACGTCAGAGAGAGAGTGCTAATCGGCTCAATTTGGCAGGATTAGATCATTTTATTCGTAGATTGATTGTAGGAAGAGTTTGTGTTAATATTAGAGCCAATCTGTATATAATCAGGGATGAGACTTTGTTTTCCTT
>TCONS_00001220
CACAATCTCCTTCAGTCGCCACAGAGTTGAGCTCCTGTCCACCGGACAGCACACAGgaGTCTCTTCCTCCTGTTCAGTTTGACTGGAGCAGCAGTGGCCTTACCAACCCTCTGGACGgtgttgaCCCAGAGCTGTATGAGTTGACCCAGGTAAAGCTGGAGGTCAGCGGGGGCAGCAGTCGAGTGGTGGATGCATTTGCTCGCCTCATGTCGACTGTAGAGAAGACCAGCACCTCCACCAGcagaaAGCCAGTGCCGAAGGAGGAGAATCTGAGCCCGGAGGCTCAGCGGGTGATCTCAGGCCTGCCGGATCTGTCCTTCATGCAGGCTAAAGTGCTGATGTTTCCCTCCACACTGACTCCTCTCCTGCCCTCGTCCTCTACGCCCGACTGACGCGCTCTTTTCCTCTCTTTCATTGTGTATCGCTCTCCAGCTCCACAATATTCGACCCCGTCTATGATTTTAATGCCATCCTTTCAGTTCTCTAGCTCTCGTTCCTCATTCTGCCCGTTTTTAAGTTCAAATACATCGTCCGGTACGTCAGAGAGAGAGTGCTAATCGGCTCAATTTGGCAGGATTAGATCATTTTATTCGTAGATTGATTGTAGGAAGAGTTTGTGTTAATATTAGAGCCAATCTGTATATAATCAGGGATGAGACTTTGTTTTCCTTTCGAGTGTTCTTCACCGTTACGTTagtgtgtatgagagagaa

Function

symbol description
aftpha Predicted to enable clathrin binding activity. Predicted to be involved in intracellular transport. Predicted to be part of AP-1 adaptor complex. Predicted to be active in trans-Golgi network membrane. Orthologous to human AFTPH (aftiphilin).

GO:

id name namespace
GO:0046907 intracellular transport biological_process
GO:0032588 trans-Golgi network membrane cellular_component
GO:0030121 AP-1 adaptor complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030276 clathrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1437 Predicted to enable clathrin binding activity. Predicted to be involved in intracellular transport. Predicted to be part of AP-1 adaptor complex. Predicted to be active in trans-Golgi network membrane. Orthologous to human AFTPH (aftiphilin).

Ensembl:

ensembl_id ENSDARG00000069249

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001219 False 2840 mRNA 0.53 10 55095314 55109872
TCONS_00001220 True 713 mRNA 0.50 4 55104376 55109914

Neighbor

gene id symbol gene type direction distance location
XLOC_000731 lgalsla coding upstream 5327 55080797 ~ 55089987 (+)
XLOC_000730 si:ch211-196h16.12 coding upstream 88091 55002583 ~ 55007223 (+)
XLOC_000729 NA coding upstream 110017 54959492 ~ 54985297 (+)
XLOC_000728 r3hcc1l coding upstream 136851 54948059 ~ 54958463 (+)
XLOC_000727 golga7ba coding upstream 163401 54908895 ~ 54931913 (+)
XLOC_000733 CU467849.1 coding downstream 18551 55128465 ~ 55128579 (+)
XLOC_000734 mb coding downstream 28029 55137943 ~ 55145085 (+)
XLOC_000735 NA coding downstream 74850 55184764 ~ 55191262 (+)
XLOC_000736 si:ch211-286b5.2 coding downstream 129246 55239160 ~ 55247253 (+)
XLOC_000737 BX284640.1 coding downstream 154798 55264712 ~ 55275813 (+)
XLOC_000721 NA non-coding upstream 394559 54698173 ~ 54700755 (+)
XLOC_000715 NA non-coding upstream 481835 54611838 ~ 54613479 (+)
XLOC_000712 NA non-coding upstream 626025 54277243 ~ 54469289 (+)
XLOC_000741 NA non-coding downstream 204560 55314474 ~ 55579436 (+)
XLOC_000742 NA non-coding downstream 216652 55326566 ~ 55343851 (+)
XLOC_000744 NA non-coding downstream 259603 55369517 ~ 55369839 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location