XLOC_000731 (lgalsla)


Basic Information

Item Value
gene id XLOC_000731
gene name lgalsla
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 55080797 ~ 55089987 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001216
GAAACTCATGCGAACCGGGAGATCCGTGTGTGTCAAGGATTTCATACCGGGCAGAACCGAGCAAAACCGGGCTTCTCATGCTGGATCTGCGTGAAAGATGGCGGAGTTAAGCGCGGTCCGACAGGAACTTAGGAGCAGAAATCTGAGCAGTTCATTCGGGGAGCTTCAGTCACCACAAAGAGATGAGCAGAAACTGgccgTGCCGTTCTGTGGAGGGATCCGTGGAGGTCTGAGACCTGGCAAGAAGATCACCATCATGGGTGTTGTGAGCGCAGATCCGGACAGTTTTGACATCagtctgacatgcggctgtgctgatgtGGCTCTTGATATGTGTGTGCGGTTCGAGGAACGGGAGATCCTGcgaaacgcctgtgtgtctgacCAGTGGGGTGACGAGGAGAGATCGATACCGTATTTCCCCTTCATCGCAGAGCAGCCCTTCAGGGTTGAGATCCACTGTGAGCATCCGCGTTTCCTCGTGCTTGTAGACGGTCATCAGCTTTTCGACTTTTACCACCGCGTGATGCCGCTGAACGCCATCGACACCATCCAGATCAGCGGCAGCTTGACCATCACCAAACTGAACTGATCTCCAGCAATACAGACTGTAAACCAGCAGAACATTCGGCCAGATCAACCCCAGAACCATCAACATGGAGGCTCTTCTTCAGCCGTGAGGAGGCTTCCATTATTATGAGCATCTCAATTATTAGGATATTAGCTGGAGTCAGTTCATAATGCACTGAAGAAttcaacatttaaaataacttGACTATAAGGTTGAGTTTTGTtactcttaaagggacagctcactcaaaaatgaaacatGTTGGGAGAAAAACAGCCATTTTCTTCTATAGTGTTTTTGTtcctacatttattcattttcctttggtttagtcacctatttatcaggggtcgccacagcagaatgaactgccaactgttccagcatatgttttatgcagtgaatgccattccagctgcaacccagtactgggaaacacctatacactctcacattcacacacatacacactacggccaatttagttcatcaattcccctatagcgcatgtgtttggactgttgaggaaaccggagcacccagtggtAACCCAacttgaggagaacatgcaaactccacacagaaacaccaactgacccagctgggactcaaatcagtgaccttcttgctgtaaggcaatagtgctaaccactgagcctccatgCTGCCTTTGTTTATGCACTGTTAATTAAaaaactcaacttaaaattgtaaggcaacttgatgaagagcttttttttttgattgatgtATCTTAAATCAAGTAAGGTGCAGTACTTAGGTTAAAAATtgagtcaacaaaaaaaaaactgcaagtcGCCTCATAGTTTTAAGtttaatcaactttttttttttttttttgcagtttatatgGATGCTTTTTCCCCAagaaaatcctgttttgtgttcaacagaagaattgAAGTTTAAAACCACATCAATATGAGGAAATTAtgaggaatgtttttttttggtgaactgtctctttaagaacaaAAAGCAATGCATTTGTTACAGTGTgtgacacattcattcattcattcattcattcattttcttttcagtcgccctttattaattaggggttgccacagcgggatggggtatatgccgaagcatgctaacaggacttttaatttgccagtaacctgggttaagggcttccggtgaactgtatgctaGTGCAAAAACCGGCGAGTTTAagggctgttttctttaaaaatcactgATGTCCACTAGCTGTGTGATATCCGATATCCGGGTCTCAGATTATACAAgatgcactgcattaaattacatttcccccgccatgtctttataatatgaggatttattttaccccactatattcaatggagcttctgcgctagcctgccgttTCTGACGggcacgtgcgagtaaacggctttttgtctcgttttacgcttgagcaactaaatgaatgccaaagtttatttaactgaatgtattttaatgacattacaatatcgatactgtaaaaggaaccgtataaaatggagaAAAGTTCACAAtgacaggtcaccggaagtttatcagcatgCTAGCTCGGCATATTCCCTATCAACTCTTTTTCcaccagcatttattttaaagaattaaataaattctTGAGCATTTTTGATGATTTTGACCTAAATTTGACGGCCCTCTGAATATTTTCCGCTATAAATATATGACagtattacagttgaagtcagaattaatcaCCCTCCTGCGAATGTTTTGTTTCctctgtcaaatatttcccaaatgatgtttaacagattcaggaatttttgacagtatttcctataatattttttcttctggataaagtcttatttgatttatttcaactaaaataaaggcagttcttaattttttaaacaccattttaagcttaatattattagcccccttaagcaatattagtttcaattacagaacaaaccactgttatacaatgacttgactaattacactaactttactctaattaaccttaaaatgtcattttaagatgaatactagtgtcttgaatactaatatgttgtaaaatattatgtgccgtcatcatagcaaagataaaagaaatcacttactagaaatgagttattaaatctattgtgctgagaaaatcttctgtccattaaacagaaattggggaaaatatataaaa
>TCONS_00001217
GATCCGTGTGTGTCAAGGATTTCATACCGGGCAGAACCGAGCAAAACCGGGCTTCTCATGCTGGATCTGCGTGAAAGATGGCGGAGTTAAGCGCGGTCCGACAGGAACTTAGGAGCAGAAATCTGAGCAGTTCATTCGGGGAGCTTCAGTCACCACAAAGAGATGAGCAGAAACTGgccgTGCCGTTCTGTGGAGGGATCCGTGGAGGTCTGAGACCTGGCAAGAAGATCACCATCATGGGTGTTGTGAGCGCAGATCCGGACAGGtaaatacagtgcatctggaaagttttgatagcgcttcactttttccacatgtttttatgttacagccttatttcaaggtggattaaattcattcagtcgattggacatgatttgaaaaggcatacacctgtctatataaggtcccagggt
>TCONS_00001218
gtggcatcatattcaaaaagacttgaggctgtaatcgctgacaaaggtgcatcaacaaagtattgagcaagtAATAAGTAACACTTGTAACTGATCTCTGTCTGTTTTCTCTGGGTCAGTTTTGACATCagtctgacatgcggctgtgctgatgtGGCTCTTGATATGTGTGTGCGGTTCGAGGAACGGGAGATCCTGcgaaacgcctgtgtgtctgacCAGTGGGGTGACGAGGAGAGATCGATACCGTATTTCCCCTTCATCGCAGAGCAGCCCTTCAGGGTTGAGATCCACTGTGAGCATCCGCGTTTCCTCGTGCTTGTAGACGGTCATCAGCTTTTCGACTTTTACCACCGCGTGATGCCGCTGAACGCCATCGACACCATCCAGATCAGCGGCAGCTTGACCATCACCAAACTGAACTGATCTCCAGCAATACAGACTGTAAACCAGCAGAACATTCGGCCAGATCAACCCCAGAACCATCAACATGGAGGCTCTTCTTCAGCCGTGAGGAGGCTTCCATTATTATGAGCATCTCAATTATTAGGATATTAGCTGGAGTCAGTTCATAATGCACTGAAGAAttcaacatttaaaataacttGACTATAAGGTTGAGTTTTGTtactcttaaagggacagctca

Function

symbol description
lgalsla Predicted to enable carbohydrate binding activity. Orthologous to human LGALSL (galectin like).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060616-24 Predicted to enable carbohydrate binding activity. Orthologous to human LGALSL (galectin like).

Ensembl:

ensembl_id ENSDARG00000059060

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001216 False 2750 mRNA 0.40 5 55080797 55089987
TCONS_00001217 False 416 lncRNA 0.48 3 55080817 55084863
TCONS_00001218 True 649 lncRNA 0.47 2 55085645 55088052

Neighbor

gene id symbol gene type direction distance location
XLOC_000730 si:ch211-196h16.12 coding upstream 73574 55002583 ~ 55007223 (+)
XLOC_000729 NA coding upstream 95500 54959492 ~ 54985297 (+)
XLOC_000728 r3hcc1l coding upstream 122334 54948059 ~ 54958463 (+)
XLOC_000727 golga7ba coding upstream 148884 54908895 ~ 54931913 (+)
XLOC_000726 zfyve27 coding upstream 172974 54889733 ~ 54907823 (+)
XLOC_000732 aftpha coding downstream 5327 55095314 ~ 55109914 (+)
XLOC_000733 CU467849.1 coding downstream 38478 55128465 ~ 55128579 (+)
XLOC_000734 mb coding downstream 47956 55137943 ~ 55145085 (+)
XLOC_000735 NA coding downstream 94777 55184764 ~ 55191262 (+)
XLOC_000736 si:ch211-286b5.2 coding downstream 149173 55239160 ~ 55247253 (+)
XLOC_000721 NA non-coding upstream 380042 54698173 ~ 54700755 (+)
XLOC_000715 NA non-coding upstream 467318 54611838 ~ 54613479 (+)
XLOC_000712 NA non-coding upstream 611508 54277243 ~ 54469289 (+)
XLOC_000741 NA non-coding downstream 224487 55314474 ~ 55579436 (+)
XLOC_000742 NA non-coding downstream 236579 55326566 ~ 55343851 (+)
XLOC_000744 NA non-coding downstream 279530 55369517 ~ 55369839 (+)

Expression


Co-expression Network