XLOC_000727 (golga7ba)


Basic Information

Item Value
gene id XLOC_000727
gene name golga7ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54908895 ~ 54931913 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001211
TGGTTACCTTCTCAGCTGAACACAGCTTCTCTCCCTGAGCGTCCACTACTGAGCTTTGACTCGTCTGTATTATAATACTTGTGCTTTAAAAACATAAATCCTCATCACAACATTACTTCACATGACTGAAGCCGTTGGAATCTGCGCGGCTTCGGTTACCCCTCCCCCCGCGCGTCAGAACATTGTGTGATTGTTTCCGGCCCCGCCCCCTCTCCGTTTATCCCCACGTCCAAACGTTTATTCCCGTGAACCCGTTTCAGCACCCGGGACAGGCGTCGCGTGCTCGCATGGCAACATGGCCACAGAGTTCCACAACCTTCAGGAACTGAGACACAGCGCATCTCTGGCCAACAAGGTCTTCATTCAGAGAGACTACACCGATGGCACGGTCTGCAAGTTCCAGACCAAGTTCCCCTCCGAGTTAGACAGCaggATCGAGCGGACGCTGTTTGAGGACACGGTGAAGACGCTGAATACTTACTATGCAGAGGCGGAGAAGATCGGAGGCCAGTCTTACATAGAAGGATGTCTGGCCTGCCTTACAGTTTACCTCATCTTCCTGTGCATCGAGACGCGTTACGAGAAGgtgctgaAGAAGATCTCGCGCTACATTCAGGAGCAGAATGAGAAAGTTTACGCTCCTCGAGGTCTCCTCATCACAGACCCGATAGAGAGAGGCATGAGGGTCATTGAGATCAGTGTGTACGAGGATCGCGGATCCAGTGGTTCCAGCTCAGGAAGCAGTACAACCAGCAGCAGCGGACGATGATTTATACAccataacatacacacacactcactcattcactcacgtGTGACGCCTTCATACTGACATttgctgaacacacacagacacacacacgctgaGCATTCAGCATCGCCAAACAGCCACACACCTGACATGACCTGCCTCCACAAGACACATGTGCTGACTCGTCATTACCTCAGTCACCCTTCAGCACCTTCACAAACCTGCAGTCGTTGCACATTCTCGAGTCGCTAGCTGTGGAAGCGTGTTTCTGCTACTGAGTAATGCAAATTAAAAACGGTAAATTAGGAGGAATGGCAGGATCTAAACTCAGAATTCCAAGCAAAAGTCAGAATTCTCAGATATAAACTCACAAGTTTAAGAAAAAGTCCAAATTTGAAAATTTAAACTCAGAATTTCAAGAACACTCAGTCAGATTTCTGAGATGTAAACTCTGAATTCCAAGGAAAAAGTCATAATTACAATAAAACTCAGTCAGATTTCTGGGATGTAAACAGTGATTGTTCTAGAAAAAGGTCAACATTTTAATAAGTAAACTCAGAATTTGAAGAAAAATCTGTCAGAATTCTGAGATTTAACATCAGAATTTCAagaaaaagtcagaattctgacatttaaacaaagaaatccaAGAAAAAGGTCTGAAATCCAAGAAAAAGGTCTTAAATCCAAGACATTAACTCTACAAACTCTGATTTGTAAATAAATGGGTTGGGTTCAACCTAAACTAAAATAACTTATGAAGTCAGAATTTACCCCCAAATTTAAAATTATGAGACAAAAACTGTGAGATGTAAATTTGCACTTTCCAACACAAAAAGTCAGATTTCCAAGATGTAAACTCAAAAATCCCAGAAAAATCTGTCAGATTTCCAGGATGTAGACTCAAATTCCTAGAACAAAAATATCAGAATTCCAAGAAAGTCTGATTTCAGAGATTTAAACTGAGAAATCCAGGAAAAGGcaaaaaaagtgaaagaaaaaaaagtccagaggGAAAAAAGTCCAGTGTGTGTAGACTTAGAATTCTTTTAGAAGTTAGAATGGCAAAATTTTATTTGATACAAACTGATttgtaaatgaatgtgtttttttcaACCTGAATGACGGTAAAATATGCTGGCAATTAAAGTCGGAATGTCTCTGAAAATTTGGAATTCTTACAAAAAGAATGTAAACTAACACATTTCCAACAAAAATTTCCGAGATGTGAATCTAGAATTCCAAGAAAAAGTCAGAATTTCAAGAAAGTCTGATTTTGATATTTATActaaaaatggaagaaaaaaaaaaatcaaaactccAACATGTAAACTTAAAATTCCAGGAAAAATAAATTCtgagatgtaaactcagaattccaAGAAAATGTCTGGATTCTGAGATTTAAATTAAGAATTCACAGAAAAAAAGTCAGAAGAATTTATAGTCAGAGTCCTGAGGAAAAAGTCCTGTGTGTGTAAACTTTCTGTGTTAGACTTCTTTTAAACGTTAGAATAGTGGAATATACATTCACAATTCAAGGGTTACTTCAAtgcaaatttgggtaaaatatgaacaaagcCAACCGCTGCAAAGTAAAGTCAGAATTTCCCCTCAAAATTGGAATTAAAAGACGCAAACTCAGAATTTCTACAAAATGTCAGAACTGTCAGATGTAAAACTTGCACATTTCCAATGAAAAAAGTCTGAGATGTAAATTTAGAATTCCAAGAAAAATCTGTCAGATTTCCAAAATTTAAACTCTAATTCCAAGGAAAAAGTGAGAATTCCTAGATGTGGTCAAAATTCCAGTAAACAAGGCAGAATACtaagatgtaaactcagaattgcaagaaaGAAAATCTAAATTCCAATATGTAAATGCAGAATTCCCTCGAAAAAGTCTGATTTCTGAGATATAAACTTAAATTCCAGGAAAATAATTCCTGAATCTGAGATGTAAAGTTAAAGACCTGAGGAAAAAGTCCCGTCTGTGAGATCTAAACTTGAAATTCCAAGAATAAACTTTAAgttctaaaaaaagaaagaaatctgaATATCTAAAAGATCGTATTTCTGAgatttaaacaaagaaatccaAGAAAAAGATCAGAAGTTCAGGATATAAACTAAGAATTTTAAGatgtaaactgaaaaaaatccagaaaaaaagacccatttacaagatgtaaagtcagatttttgaagtaaaaaaaagtcaAGGCTGTGAAAAAAAAGAAGTCCAAGATTTACTCCTAAAGTCTAAGAAAGGTATCACGCATTTCTGTTCCTCACAGCAGAAACAATCTTCCTTTCTATCTGTAGCATACTGGTTAAAGCGCACATACGCTTCTGTCACTGTAATATGCAATCTCGCTCACAAACGCTGTGTGATGTAGCTGCCGATCGGCACACAACAGTCTTCCATCCTCATCGTTTTTTACCCCTTTTGTGTTTGAGTATTTGGAGTTGAGCACTTTTACTCTTAACTATCGAAAAAAGAGTCCAATTTGTAGACTAGAATCTGTAGATGTTCATGATGAGGACAGATGCGGAGATCTGACCCCAGACACTGCCATATTAAATCACGGGTACTATTTGTGACTTTA
>TCONS_00001212
AGCTGGAcatcaaagaggataaaagcggCTGTCCACGGGTCCCTAAGCTCTTTTAGCGAAAGCACAGCGAGTGTTTGTGAGCGAGTTTAGGTTATCTCGTCGGTGACCGGAATGATTTCAGCACCGCGGACAGCGACGGACCGAACAAAACTCCCGTACTGTCACGAATCTTTCCACAACCTTCAGGAACTGAGACACAGCGCATCTCTGGCCAACAAGGTCTTCATTCAGAGAGACTACACCGATGGCACGGTCTGCAAGTTCCAGACCAAGTTCCCCTCCGAGTTAGACAGCaggATCGAGCGGACGCTGTTTGAGGACACGGTGAAGACGCTGAATACTTACTATGCAGAGGCGGAGAAGATCGGAGGCCAGTCTTACATAGAAGGATGTCTGGCCTGCCTTACAGTTTACCTCATCTTCCTGTGCATCGAGACGCGTTACGAGAAGgtgctgaAGAAGATCTCGCGCTACATTCAGGAGCAGAATGAGAAAGTTTACGCTCCTCGAGGTCTCCTCATCACAGACCCGATAGAGAGAGGCATGAGGGTCATTGAGATCAGTGTGTACGAGGATCGCGGATCCAGTGGTTCCAGCTCAGGAAGCAGTACAACCAGCAGCAGCGGACGATGATTTATACAccataacatacacacacactcactcattcactcacgtGTGACGCCTTCATACTGACATttgctgaacacacacagacacacacacgctgaGCATTCAGCATCGCCAAACAGCCACACACCTGACATGACCTGCCTCCACAAGACACATGTGCTGACTCGTCATTACCTCAGTCACCCTTCAGCACCTTCACAAACCTGCAGTCGTTGCACATTCTCGAGTCGCTAGCTGTGGAAGCGTGTTTCTGCTACTGAGTAATGCAAATTAAAAACGGTAAATTAGGAGGAATGGCAGGATCTAAACTCAGAATTCCAAGCAAAAGTCAGAATTCTCAGATATAAACTCACAAGTTTAAGAAAAAGTCCAAATTTGAAAATTTAAACTCAGAATTTCAAGAACACTCAGTCAGATTTCTGAGATGTAAACTCTGAATTCCAAGGAAAAAGTCATAATTACAATAAAACTCAGTCAGATTTCTGGGATGTAAACAGTGATTGTTCTAGAAAAAGGTCAACATTTTAATAAGTAAACTCAGAATTTGAAGAAAAATCTGTCAGAATTCTGAGATTTAACATCAGAATTTCAagaaaaagtcagaattctgacatttaaacaaagaaatccaAGAAAAAGGTCTGAAATCCAAGAAAAAGGTCTTAAATCCAAGACATTAACTCTACAAACTCTGATTTGTAAATAAATGGGTTGGGTTCAACCTAAACTAAAATAACTTATGAAGTCAGAATTTACCCCCAAATTTAAAATTATGAGACAAAAACTGTGAGATGTAAATTTGCACTTTCCAACACAAAAAGTCAGATTTCCAAGATGTAAACTCAAAAATCCCAGAAAAATCTGTCAGATTTCCAGGATGTAGACTCAAATTCCTAGAACAAAAATATCAGAATTCCAAGAAAGTCTGATTTCAGAGATTTAAACTGAGAAATCCAGGAAAAGGcaaaaaaagtgaaagaaaaaaaagtccagaggGAAAAAAGTCCAGTGTGTGTAGACTTAGAATTCTTTTAGAAGTTAGAATGGCAAAATTTTATTTGATACAAACTGATttgtaaatgaatgtgtttttttcaACCTGAATGACGGTAAAATATGCTGGCAATTAAAGTCGGAATGTCTCTGAAAATTTGGAATTCTTACAAAAAGAATGTAAACTAACACATTTCCAACAAAAATTTCCGAGATGTGAATCTAGAATTCCAAGAAAAAGTCAGAATTTCAAGAAAGTCTGATTTTGATATTTATActaaaaatggaagaaaaaaaaaaatcaaaactccAACATGTAAACTTAAAATTCCAGGAAAAATAAATTCtgagatgtaaactcagaattccaAGAAAATGTCTGGATTCTGAGATTTAAATTAAGAATTCACAGAAAAAAAGTCAGAAGAATTTATAGTCAGAGTCCTGAGGAAAAAGTCCTGTGTGTGTAAACTTTCTGTGTTAGACTTCTTTTAAACGTTAGAATAGTGGAATATACATTCACAATTCAAGGGTTACTTCAAtgcaaatttgggtaaaatatgaacaaagcCAACCGCTGCAAAGTAAAGTCAGAATTTCCCCTCAAAATTGGAATTAAAAGACGCAAACTCAGAATTTCTACAAAATGTCAGAACTGTCAGATGTAAAACTTGCACATTTCCAATGAAAAAAGTCTGAGATGTAAATTTAGAATTCCAAGAAAAATCTGTCAGATTTCCAAAATTTAAACTCTAATTCCAAGGAAAAAGTGAGAATTCCTAGATGTGGTCAAAATTCCAGTAAACAAGGCAGAATACtaagatgtaaactcagaattgcaagaaaGAAAATCTAAATTCCAATATGTAAATGCAGAATTCCCTCGAAAAAGTCTGATTTCTGAGATATAAACTTAAATTCCAGGAAAATAATTCCTGAATCTGAGATGTAAAGTTAAAGACCTGAGGAAAAAGTCCCGTCTGTGAGATCTAAACTTGAAATTCCAAGAATAAACTTTAAgttctaaaaaaagaaagaaatctgaATATCTAAAAGATCGTATTTCTGAgatttaaacaaagaaatccaAGAAAAAGATCAGAAGTTCAGGATATAAACTAAGAATTTTAAGatgtaaactgaaaaaaatccagaaaaaaagacccatttacaagatgtaaagtcagatttttgaagtaaaaaaaagtcaAGGCTGTGAAAAAAAAGAAGTCCAAGATTTACTCCTAAAGTCTAAGAAAGGTATCACGCATTTCTGTTCCTCACAGCAGAAACAATCTTCCTTTCTATCTGTAGCATACTGGTTAAAGCGCACATACGCTTCTGTCACTGTAATATGCAATCTCGCTCACAAACGCTGTGTGATGTAGCTGCCGATCGGCACACAACAGTCTTCCATCCTCATCGTTTTTTACCCCTTTTGTGTTTGAGTATTTGGAGTTGAGCACTTTTACTCTTAACTATCGAAAAAAGAGTCCAATTTGTAGACTAGAATCTGTAGATGTTCATGATGAGGACAGATGCGGAGATCTGACCCCAGACACTGCCATATTAAATCACGGGTACTATTTGTGACTTTATTTacgatttatgttttatttcatagTGTGCTAAACATTCATGCTTTGTACTCATAATGCGCCGTCAAAGCGGAAACGAGTGCTGATGACGTGAACTGCCAAGGGCCAGAGCTTCCTCACACGATCCTTCGTCATGAGCTTCCATTTTCTTACTGAGAACCTTTGGCCCCAAGAATTTATGCAAAGAGAAAAAGAAGTTGAaagtgctttttctgtttgtgtagcaaaataaatgagaaaaatgaTTGTCAAA

Function

symbol description
golga7ba Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in membrane. Predicted to be part of palmitoyltransferase complex. Is expressed in brain; central nervous system; and solid lens vesicle. Orthologous to human GOLGA7B (golgin A7 family member B).

GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0018230 peptidyl-L-cysteine S-palmitoylation biological_process
GO:0002178 palmitoyltransferase complex cellular_component
GO:0019706 protein-cysteine S-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-14 Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in membrane. Predicted to be part of palmitoyltransferase complex. Is expressed in brain; central nervous system; and solid lens vesicle. Orthologous to human GOLGA7B (golgin A7 family member B).

Ensembl:

ensembl_id ENSDARG00000036295

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001211 False 3360 mRNA 0.38 5 54908895 54931660
TCONS_00001212 True 3477 mRNA 0.37 5 54911458 54931913

Neighbor

gene id symbol gene type direction distance location
XLOC_000726 zfyve27 coding upstream 1072 54889733 ~ 54907823 (+)
XLOC_000725 si:ch211-196h16.5 coding upstream 19394 54865552 ~ 54889501 (+)
XLOC_000724 si:ch211-196h16.4 coding upstream 47307 54834119 ~ 54861588 (+)
XLOC_000723 nlrc6 coding upstream 123712 54766943 ~ 54785183 (+)
XLOC_000722 pi4k2a coding upstream 153339 54737353 ~ 54755556 (+)
XLOC_000728 r3hcc1l coding downstream 16146 54948059 ~ 54958463 (+)
XLOC_000729 NA coding downstream 27579 54959492 ~ 54985297 (+)
XLOC_000730 si:ch211-196h16.12 coding downstream 70670 55002583 ~ 55007223 (+)
XLOC_000731 lgalsla coding downstream 148884 55080797 ~ 55089987 (+)
XLOC_000732 aftpha coding downstream 163401 55095314 ~ 55109914 (+)
XLOC_000721 NA non-coding upstream 208140 54698173 ~ 54700755 (+)
XLOC_000715 NA non-coding upstream 295416 54611838 ~ 54613479 (+)
XLOC_000712 NA non-coding upstream 439606 54277243 ~ 54469289 (+)
XLOC_000713 NA non-coding upstream 504748 54401933 ~ 54404147 (+)
XLOC_000710 CABZ01067150.1 non-coding upstream 722739 54186039 ~ 54186156 (+)
XLOC_000733 CU467849.1 non-coding downstream 196552 55128465 ~ 55128579 (+)
XLOC_000735 NA non-coding downstream 252851 55184764 ~ 55191262 (+)
XLOC_000741 NA non-coding downstream 382561 55314474 ~ 55579436 (+)
XLOC_000742 NA non-coding downstream 394653 55326566 ~ 55343851 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000303_00225857_00228265 NA coding CI01000303 null 225857 ~ 228460 (+)