XLOC_000722 (pi4k2a)


Basic Information

Item Value
gene id XLOC_000722
gene name pi4k2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54737353 ~ 54755556 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001200
TGTGATTGTTTGTTGGCGATCTGCTGTAAAGAGCCGCATCATTTCATTACGGCAACAAACAGGCGCTTGTCCCGGGTAAATTCCCCCTTTACCCACTCTCTCCCTACTCCGCCATGGACGAAACGAGCCCGCTAGTCTCGCCGCTCCGCGATTCCAACGATTTTAACTACGGGCCCGCAGAGCCGACCAGTCCCCGGGGTGGATTTGGAAGTACACCGGGCTCAGTAGTGCGTCTTCCGGCAGGGAGTCCCGGGCGCAGCCGCGAAAGACAGCCGCTGCTAGACCGAGATCGAGGCGCGTCTCCCCGGGATCCGCACAGGAACGAGTTCCCAGAGGACCCGGAGTTTCGGGAGATCATCCGGAAGGCGGAGCGGGCCATCGAGGAGGGCATTTACCCGGAGCGCATCTACCAGGGCTCCAGCGGCAGCTACTTCGTCAAAGATTCAGCAGGGAAGATCATCGGAGTCTTCAAACCAAAGAATGAAGAGCCGTACGGCCAGCTGAACCCCAAATGGACCAAATGGCTTCAGAAGCTGTGCTGTCCGTGCTGCTTCGGCCGCGACTGCCTGGTTCTGAATCAGGGTTATCTATCAGAGGCCGGAGCCAGTTTAGTGGACCAGAAACTAGAACTCAACATTGTGCCGCGCACAAAGGTGGTTTATTTAGCAAGTGAAACCTTTAATTACAGTGCCATTGATCGAGTGAAGTCTCGAGGAAAGAGGTTAGCTCTAGAAAAAGTGCCCAAAGTGGGCCAACGTTTCCACCGGATCGGCCTGCCACCTAAGGTGGGATCATTCCAGATTTTCGTAGAAGGTTATAAAGATGCAGATTTCTGGCTGCGGCGGTTCGAGGCAGAGCCTTTACCAGAAAACACTAATCGTCAACTTCAGCTGCAGTTCGAGAGACTGGTGGTGCTGGATTACATCATCAGAAACACGGaTCGAGGAAATGACAACTGGCTCATAAAATATGATTATCCGATGGATACCTCAAGCAACAGGGACAGTGATTGGGTGTTAGTGAAGGACCCCATCATTAAACTGGCAGCCATCGACAATGGTCTGGCCTTCCCTCTCAAACACCCAGACTCATGGAGAGCCTACCCGTTTTACTGGGCCTGGCTTCCACAGGCTAAAGTTGTGTTTTCCCAAGAGATCCGAGATTTAGTTCTGCCTAAATTAGCAGACCCGAACTTCATCAAAGACCTCGAAGAAGATCTCTATGAGCTTTTTAAGAAAGATCCAGGTTTTGACAGAGGACAGTTCAAGAAGCAGGTCTCGGTAATGAGGGGTCAGATCCTGAACCTCAGTCAGGCGATGCGGGACGGGAAGACGCCGCTCCAGCTGGTGCAGATGCCGCCTGTGATTGTGGAGACGGCCCGAGTGCCACAGCGCGCCAACAGCGAATCCTACACGCAGAGCTTCCAGAGCAGAAGACCGTTCTTCACATGGTGGTGATGCAGCCTTTTACTCGCATCTGCAGCCTGGTTTTAGTCACGTTTTTGATGggagtttgggaacaaatgaatgaaggagtCAAATGATTGACGACAAACACATAATCCTGATGGAGGAGCATCGCCTTGTTGACTGTTACACTGTATGGACACGTTCAAAATGACTTGCATGTCAATAAGATGACGAAGGAGAAGCTTTTCTGCTGTAGTAAAACATCAATGCTTGACGGCTGCTTTCCCAGCACTGGATCTCCTGGAACTGCTCACCCGtgctttactttcactttcctGCAATCGTTcgaaaaaagccacacacacacacacacttctgttcTCTGCTTTCCTTATATTTTTCTACTTTTGTACATGCACGTAACCCGGAGCTCGACTGAGCATGTGCGGAAACACTGGACGGCGTCTCTGTGACatcattatgtttttattgctgGGCAATGATTAATTTAGTCCAAAActatagtttgtttttacattaaatatatgTAAGTGTTATGTACATTTATcatagatttatatataaatacacacatacatgaaaCAAATTCTatacaaatgaataatatttACTAGAGGTGTGGCAGAAAAATTTACTAGAGCTGTGAAATTCAAGAAATCAGGGGCGCTGTATGCTTTATAAACTAGAGTGCTATCtcctgttcaaaactagcctagagcgccatctggtgtttcaaactagcctagagcgtctcaaaactagcctagagtggcaTCTggtgttcaaaactagcctagagcgtctcaaaactagcctagagcgtcacctgctgtttaaaactagcctagagcgtctcaaaactagcctagagcatcatctgctgtttaaaactagcctagagtggcaTCTggtgttcaaaactagcctagagcgcctcaAAATTAGCCTATAGCGTCATCTgcagtttaaaactagcctagagcgccatctggtgttcaaaactagcccagagcgccatTTGGTGCTTAAAACTAGTCTTAGAGCGTCTCaaaactaccctagagcgccatctggtgttaaaaactatcccagagcaccatctgctgttcaataACTAGTCTTAGAGCGTCTCAAAACTAGCTCAGAGCGCCTTCTGCTGTTCAAAATTAGCCCAGAGCGCCATTTGGTGTTCAAAACGGGCCCAGAGCACCATCTGcggttcaaaactagcctagagcatctcaaaactagcctaaagcatcatctgctgttcaaaactagcctcgAGCATCATCtgatgttcaaaactagcctagatcatcttaaaactagcctggagcaccatctgttgttcaaaactagcccaGAGTATCATCTGGTGTTCACAACCCTTTCTTTTTCGCCATCTGCTGCTctaaaccagcctagagcgctgCCATCTGTGGTTCTAAACTAGCCAAGTGCACAGTCTGCAGTTCTAAActtgcctagagtgccatctgctgttctgTACTAGCCTAGAGTCTCtcaaaattagcctagagcgtctaaaaactagcctagagcgccacctggTGTTCAAATCTAGctcagagcgccatctgctgttcaaaactagcccagAGTGCCATCTGGTGTTTaaagctagcctagagtgccccctggtgttcaaaactagcctagagcatctcaaatctagcctagagcgccatctgcggttcttaattagcctagagcgccgtgtGCTGTTCtaaactaacctagagtgccgtctgcagTTTTAAAGTAGCCCAGAGCGTTATCTGCTGTTctgaactagcctagagcaatgtCTACAGTTCTGAATtagcccagagcgccatctgctgttctgaactagcctagagcgacgtcTACAGTTCTGAATtagcccagagcgccatctgctgttctgaactagcctagagcgatgtCTACAGTTCTGAATtagcccagagcgccatctgctgttctgAACTAGCCTACAGCACCATCTAGTTAACTAGATTCATATAAAAATGGTGCATTTTGAAAATTCACATTTGAATGTTCACCACTGCTCTAATATTtacagatatttaaatgtataatctgtacatgtatatgtatacataGATCTAAATAATTTCTCATGTACACtcacatttaatattaatacaagcttttattttggatgtggttAATCATTGCTCAGcacttgttattttgttttgtttttgttcaatttaatttgtaaagcagattttttttttaacaatgtgttCACAGGTGTCAATGAAACTGACCATGACAATGGACTGTATAATTTGTATGTAATGTATTTAATGAAAGACGCTAAAAACTATAATGTTACTCAATAAAAGAACAGACTCGA
>TCONS_00001201
AACAAACAGGCGCTTGTCCCGGGTAAATTCCCCCTTTACCCACTCTCTCCCTACTCCGCCATGGACGAAACGAGCCCGCTAGTCTCGCCGCTCCGCGATTCCAACGATTTTAACTACGGGCCCGCAGAGCCGACCAGTCCCCGGGGTGGATTTGGAAGTACACCGGGCTCAGTAGTGCGTCTTCCGGCAGGGAGTCCCGGGCGCAGCCGCGAAAGACAGCCGCTGCTAGACCGAGATCGAGGCGCGTCTCCCCGGGATCCGCACAGGAACGAGTTCCCAGAGGACCCGGAGTTTCGGGAGATCATCCGGAAGGCGGAGCGGGCCATCGAGGAGGGCATTTACCCGGAGCGCATCTACCAGGGCTCCAGCGGCAGCTACTTCGTCAAAGATTCAGCAGGGAAGATCATCGGAGTCTTCAAACCAAAGAATGAAGAGCCGTACGGCCAGCTGAACCCCAAATGGACCAAATGGCTTCAGAAGCTGTGCTGTCCGTGCTGCTTCGGCCGCGACTGCCTGGTTCTGAATCAGGGTTATCTATCAGAGGCCGGAGCCAGTTTAGTGGACCAGAAACTAGAACTCAACATTGTGCCGCGCACAAAGGTGGTTTATTTAGCAAGTGAAACCTTTAATTACAGTGCCATTGATCGAGTGAAGTCTCGAGGAAAGAGGTTAGCTCTAGAAAAAGTGCCCAAAGTGGGCCAACGTTTCCACCGGATCGGCCTGCCACCTAAGGTGGGATCATTCCAGATTTTCGTAGAAGGTTATAAAGATGCAGATTTCTGGCTGCGGCGGTTCGAGGCAGAGCCTTTACCAGAAAACACTAATCGTCAACTTCAGCTGCAGTTCGAGAGACTGGTGGTGCTGGATTACATCATCAGAAACACGGaTCGAGGAAATGACAACTGGCTCATAAAATATGATTATCCGATGGATACCTCAAGCAACAGGGACAGTGATTGGGTGTTAGTGAAGGACCCCATCATTAAACTGGCAGCCATCGACAATGGTCTGGCCTTCCCTCTCAAACACCCAGACTCATGGAGAGCCTACCCGTTTTACTGGGCCTGGCTTCCACAGGCTAAAGTTGTGTTTTCCCAAGAGATCCGAGATTTAGTTCTGCCTAAATTAGCAGACCCGAACTTCATCAAAGACCTCGAAGAAGATCTCTATGAGCTTTTTAAGAAAGATCCAGGTTTTGACAGAGGACAGTTCAAGAAGCAGGTCTCGGTAATGAGGGGTCAGATCCTGAACCTCAGTCAGGCGATGCGGGACGGGAAGACGCCGCTCCAGCTGGTGCAGATGCCGCCTGTGATTGTGGAGACGGCCCGAGTGCCACAGCGCGCCAACAGCGAATCCTACACGCAGAGCTTCCAGAGCAGAAGACCGTTCTTCACATGGTGGTGATGCAGCCTTTTACTCGCATCTGCAGCCTGGTTTTAGTCACGTTTTTGATGggagtttgggaacaaatgaatgaaggagtCAAATGATTGACGACAAACACATAATCCTGATGGAGGAGCATCGCCTTGTTGACTGTTACACTGTATGGACACGTTCAAAATGACTTGCATGTCAATAAGATGACGAAGGAGAAGCTTTTCTGCTGTAGTAAAACATCAATGCTTGACGGCTGCTTTCCCAGCACTGGATCTCCTGGAACTGCTCACCCGtgctttactttcactttcctGCAATCGTTcgaaaaaagccacacacacacacacacttctgttcTCTGCTTTCCTTATATTTTTCTACTTTTGTACATGCACGTAACCCGGAGCTCGACTGAGCATGTGCGGAAACACTGGACGGCGTCTCTGTGACatcattatgtttttattgctgGGCAATGATTAATTTAGTCCAAAActatagtttgtttttacattaaatatatgTAAGTGTTATGTACATTTATcatagatttatatataaatacacacatacatgaaaCAAATTCTatacaaatgaataatatttACTAGAGGTGTGGCAGAAAAATTTACTAGAGCTGTGAAATTCAAGAAATCAGGGGCGCTGTATGCTTTATAAACTAGAGTGCTATCtcctgttcaaaactagcctagagcgccatctggtgtttcaaactagcctagagcgtctcaaaactagcctagagtggcaTCTggtgttcaaaactagcctagagcgtctcaaaactagcctagagcgtcacaactagcctagagtggcaTCTggtgttcaaaactagcctagagcgcctcaAAATTAGCCTATAGCGTCATCTgcagtttaaaactagcctagagcgccatctggtgttcaaaactagcccagagcgccatTTGGTGCTTAAAACTAGTCTTAGAGCGTCTCaaaactaccctagagcgccatctggtgttaaaaactatcccagagcaccatctgctgttcaataACTAGTCTTAGAGCGTCTCAAAACTAGCTCAGAGCGCCTTCTGCTGTTCAAAATTAGCCCAGAGCGCCATTTGGTGTTCAAAACGGGCCCAGAGCACCATCTGcggttcaaaactagcctagagcatctcaaaactagcctaaagcatcatctgctgttcaaaactagcctcgAGCATCATCtgatgttcaaaactagcctagatcatcttaaaactagcctggagcaccatctgttgttcaaaactagcccaGAGTATCATCTGGTGTTCACAACCCTTTCTTTTTCGCCATCTGCTGCTctaaaccagcctagagcgctgCCATCTGTGGTTCTAAACTAGCCAAGTGCACAGTCTGCAGTTCTAAActtgcctagagtgccatctgctgttctgTACTAGCCTAGAGTCTCtcaaaattagcctagagcgtctaaaaactagcctagagcgccacctggTGTTCAAATCTAGctcagagcgccatctgctgttcaaaactagcccagAGTGCCATCTGGTGTTTaaagctagcctagagtgccccctggtgttcaaaactagcctagagcatctcaaatctagcctagagcgccatctgcggttcttaattagcctagagcgccgtgtGCTGTTCtaaactaacctagagtgccgtctgcagTTTTAAAGTAGCCCAGAGCGTTATCTGCTGTTctgaactagcctagagcaatgtCTACAGTTCTGAATtagcccagagcgccatctgctgttctgaactagcctagagcgacgtcTACAGTTCTGAATtagcccagagcgccatctgctgttctgaactagcctagagcgatgtCTACAGTTCTGAATtagcccagagcgccatctgctgttctgAACTAGCCTACAGCACCATCTAGTTAACTAGATTCATATAAAAATGGTGCATTTTGAA

Function

symbol description
pi4k2a Predicted to enable 1-phosphatidylinositol 4-kinase activity; AP-3 adaptor complex binding activity; and ATP binding activity. Predicted to be involved in Golgi organization; endosome organization; and phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be located in several cellular components, including growing cell tip; membrane raft; and presynaptic membrane. Predicted to be integral component of plasma membrane. Predicted to be active in endosome; plasma membrane; and trans-Golgi network. Orthologous to human PI4K2A (phosphatidylinositol 4-kinase type 2 alpha).

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0006661 phosphatidylinositol biosynthetic process biological_process
GO:0007030 Golgi organization biological_process
GO:0007032 endosome organization biological_process
GO:0016310 phosphorylation biological_process
GO:0005768 endosome cellular_component
GO:0042995 cell projection cellular_component
GO:0045121 membrane raft cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0030425 dendrite cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0035838 growing cell tip cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0031083 BLOC-1 complex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0043204 perikaryon cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0035651 AP-3 adaptor complex binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0004430 1-phosphatidylinositol 4-kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2675 Predicted to enable 1-phosphatidylinositol 4-kinase activity; AP-3 adaptor complex binding activity; and ATP binding activity. Predicted to be involved in Golgi organization; endosome organization; and phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be located in several cellular components, including growing cell tip; membrane raft; and presynaptic membrane. Predicted to be integral component of plasma membrane. Predicted to be active in endosome; plasma membrane; and trans-Golgi network. Orthologous to human PI4K2A (phosphatidylinositol 4-kinase type 2 alpha).

Ensembl:

ensembl_id ENSDARG00000033666

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001200 False 3822 mRNA 0.46 9 54737353 54755556
TCONS_00001201 True 3366 mRNA 0.48 10 54737406 54755215

Neighbor

gene id symbol gene type direction distance location
XLOC_000721 NA coding upstream 36598 54698173 ~ 54700755 (+)
XLOC_000720 knop1 coding upstream 43341 54683655 ~ 54694012 (+)
XLOC_000719 gprc5bb coding upstream 57250 54673846 ~ 54680103 (+)
XLOC_000718 si:ch211-202h22.7 coding upstream 77430 54650048 ~ 54659923 (+)
XLOC_000717 si:ch211-202h22.8 coding upstream 88587 54638126 ~ 54648766 (+)
XLOC_000723 nlrc6 coding downstream 11387 54766943 ~ 54785183 (+)
XLOC_000724 si:ch211-196h16.4 coding downstream 78563 54834119 ~ 54861588 (+)
XLOC_000725 si:ch211-196h16.5 coding downstream 109996 54865552 ~ 54889501 (+)
XLOC_000726 zfyve27 coding downstream 134177 54889733 ~ 54907823 (+)
XLOC_000727 golga7ba coding downstream 153339 54908895 ~ 54931913 (+)
XLOC_000715 NA non-coding upstream 123874 54611838 ~ 54613479 (+)
XLOC_000712 NA non-coding upstream 268064 54277243 ~ 54469289 (+)
XLOC_000713 NA non-coding upstream 333206 54401933 ~ 54404147 (+)
XLOC_000710 CABZ01067150.1 non-coding upstream 551197 54186039 ~ 54186156 (+)
XLOC_000729 NA non-coding downstream 203936 54959492 ~ 54985297 (+)
XLOC_000733 CU467849.1 non-coding downstream 372909 55128465 ~ 55128579 (+)
XLOC_000735 NA non-coding downstream 429208 55184764 ~ 55191262 (+)
XLOC_000741 NA non-coding downstream 558918 55314474 ~ 55579436 (+)
XLOC_000742 NA non-coding downstream 571010 55326566 ~ 55343851 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00003051 pi4k2a,LOC105896299 coding CM030139.1 CM030139.1 10309072 ~ 10317799 (+)