RNA id: TCONS_00001201


Basic Information

Item Value
RNA id TCONS_00001201
length 3366
RNA type mRNA
GC content 0.48
exon number 10
gene id XLOC_000722
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54737353 ~ 54755556 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACAAACAGGCGCTTGTCCCGGGTAAATTCCCCCTTTACCCACTCTCTCCCTACTCCGCCATGGACGAAACGAGCCCGCTAGTCTCGCCGCTCCGCGATTCCAACGATTTTAACTACGGGCCCGCAGAGCCGACCAGTCCCCGGGGTGGATTTGGAAGTACACCGGGCTCAGTAGTGCGTCTTCCGGCAGGGAGTCCCGGGCGCAGCCGCGAAAGACAGCCGCTGCTAGACCGAGATCGAGGCGCGTCTCCCCGGGATCCGCACAGGAACGAGTTCCCAGAGGACCCGGAGTTTCGGGAGATCATCCGGAAGGCGGAGCGGGCCATCGAGGAGGGCATTTACCCGGAGCGCATCTACCAGGGCTCCAGCGGCAGCTACTTCGTCAAAGATTCAGCAGGGAAGATCATCGGAGTCTTCAAACCAAAGAATGAAGAGCCGTACGGCCAGCTGAACCCCAAATGGACCAAATGGCTTCAGAAGCTGTGCTGTCCGTGCTGCTTCGGCCGCGACTGCCTGGTTCTGAATCAGGGTTATCTATCAGAGGCCGGAGCCAGTTTAGTGGACCAGAAACTAGAACTCAACATTGTGCCGCGCACAAAGGTGGTTTATTTAGCAAGTGAAACCTTTAATTACAGTGCCATTGATCGAGTGAAGTCTCGAGGAAAGAGGTTAGCTCTAGAAAAAGTGCCCAAAGTGGGCCAACGTTTCCACCGGATCGGCCTGCCACCTAAGGTGGGATCATTCCAGATTTTCGTAGAAGGTTATAAAGATGCAGATTTCTGGCTGCGGCGGTTCGAGGCAGAGCCTTTACCAGAAAACACTAATCGTCAACTTCAGCTGCAGTTCGAGAGACTGGTGGTGCTGGATTACATCATCAGAAACACGGaTCGAGGAAATGACAACTGGCTCATAAAATATGATTATCCGATGGATACCTCAAGCAACAGGGACAGTGATTGGGTGTTAGTGAAGGACCCCATCATTAAACTGGCAGCCATCGACAATGGTCTGGCCTTCCCTCTCAAACACCCAGACTCATGGAGAGCCTACCCGTTTTACTGGGCCTGGCTTCCACAGGCTAAAGTTGTGTTTTCCCAAGAGATCCGAGATTTAGTTCTGCCTAAATTAGCAGACCCGAACTTCATCAAAGACCTCGAAGAAGATCTCTATGAGCTTTTTAAGAAAGATCCAGGTTTTGACAGAGGACAGTTCAAGAAGCAGGTCTCGGTAATGAGGGGTCAGATCCTGAACCTCAGTCAGGCGATGCGGGACGGGAAGACGCCGCTCCAGCTGGTGCAGATGCCGCCTGTGATTGTGGAGACGGCCCGAGTGCCACAGCGCGCCAACAGCGAATCCTACACGCAGAGCTTCCAGAGCAGAAGACCGTTCTTCACATGGTGGTGATGCAGCCTTTTACTCGCATCTGCAGCCTGGTTTTAGTCACGTTTTTGATGggagtttgggaacaaatgaatgaaggagtCAAATGATTGACGACAAACACATAATCCTGATGGAGGAGCATCGCCTTGTTGACTGTTACACTGTATGGACACGTTCAAAATGACTTGCATGTCAATAAGATGACGAAGGAGAAGCTTTTCTGCTGTAGTAAAACATCAATGCTTGACGGCTGCTTTCCCAGCACTGGATCTCCTGGAACTGCTCACCCGtgctttactttcactttcctGCAATCGTTcgaaaaaagccacacacacacacacacttctgttcTCTGCTTTCCTTATATTTTTCTACTTTTGTACATGCACGTAACCCGGAGCTCGACTGAGCATGTGCGGAAACACTGGACGGCGTCTCTGTGACatcattatgtttttattgctgGGCAATGATTAATTTAGTCCAAAActatagtttgtttttacattaaatatatgTAAGTGTTATGTACATTTATcatagatttatatataaatacacacatacatgaaaCAAATTCTatacaaatgaataatatttACTAGAGGTGTGGCAGAAAAATTTACTAGAGCTGTGAAATTCAAGAAATCAGGGGCGCTGTATGCTTTATAAACTAGAGTGCTATCtcctgttcaaaactagcctagagcgccatctggtgtttcaaactagcctagagcgtctcaaaactagcctagagtggcaTCTggtgttcaaaactagcctagagcgtctcaaaactagcctagagcgtcacaactagcctagagtggcaTCTggtgttcaaaactagcctagagcgcctcaAAATTAGCCTATAGCGTCATCTgcagtttaaaactagcctagagcgccatctggtgttcaaaactagcccagagcgccatTTGGTGCTTAAAACTAGTCTTAGAGCGTCTCaaaactaccctagagcgccatctggtgttaaaaactatcccagagcaccatctgctgttcaataACTAGTCTTAGAGCGTCTCAAAACTAGCTCAGAGCGCCTTCTGCTGTTCAAAATTAGCCCAGAGCGCCATTTGGTGTTCAAAACGGGCCCAGAGCACCATCTGcggttcaaaactagcctagagcatctcaaaactagcctaaagcatcatctgctgttcaaaactagcctcgAGCATCATCtgatgttcaaaactagcctagatcatcttaaaactagcctggagcaccatctgttgttcaaaactagcccaGAGTATCATCTGGTGTTCACAACCCTTTCTTTTTCGCCATCTGCTGCTctaaaccagcctagagcgctgCCATCTGTGGTTCTAAACTAGCCAAGTGCACAGTCTGCAGTTCTAAActtgcctagagtgccatctgctgttctgTACTAGCCTAGAGTCTCtcaaaattagcctagagcgtctaaaaactagcctagagcgccacctggTGTTCAAATCTAGctcagagcgccatctgctgttcaaaactagcccagAGTGCCATCTGGTGTTTaaagctagcctagagtgccccctggtgttcaaaactagcctagagcatctcaaatctagcctagagcgccatctgcggttcttaattagcctagagcgccgtgtGCTGTTCtaaactaacctagagtgccgtctgcagTTTTAAAGTAGCCCAGAGCGTTATCTGCTGTTctgaactagcctagagcaatgtCTACAGTTCTGAATtagcccagagcgccatctgctgttctgaactagcctagagcgacgtcTACAGTTCTGAATtagcccagagcgccatctgctgttctgaactagcctagagcgatgtCTACAGTTCTGAATtagcccagagcgccatctgctgttctgAACTAGCCTACAGCACCATCTAGTTAACTAGATTCATATAAAAATGGTGCATTTTGAA

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0006661 phosphatidylinositol biosynthetic process biological_process
GO:0007030 Golgi organization biological_process
GO:0007032 endosome organization biological_process
GO:0016310 phosphorylation biological_process
GO:0005768 endosome cellular_component
GO:0042995 cell projection cellular_component
GO:0045121 membrane raft cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0030425 dendrite cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0035838 growing cell tip cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0031083 BLOC-1 complex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0043204 perikaryon cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0035651 AP-3 adaptor complex binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0004430 1-phosphatidylinositol 4-kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2675 Predicted to enable 1-phosphatidylinositol 4-kinase activity; AP-3 adaptor complex binding activity; and ATP binding activity. Predicted to be involved in Golgi organization; endosome organization; and phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be located in several cellular components, including growing cell tip; membrane raft; and presynaptic membrane. Predicted to be integral component of plasma membrane. Predicted to be active in endosome; plasma membrane; and trans-Golgi network. Orthologous to human PI4K2A (phosphatidylinositol 4-kinase type 2 alpha).

Ensembl:

ensembl_id ENSDART00000162075

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003180 lncRNA upstream 36651 54698173 ~ 54700755 (+) False XLOC_000721
TCONS_00003181 lncRNA upstream 36651 54698183 ~ 54700755 (+) False XLOC_000721
TCONS_00003182 lncRNA upstream 36651 54698188 ~ 54700755 (+) True XLOC_000721
TCONS_00003179 lncRNA upstream 123927 54611838 ~ 54613479 (+) True XLOC_000715
TCONS_00003178 lncRNA upstream 333259 54401933 ~ 54404147 (+) True XLOC_000713
TCONS_00001210 lncRNA downstream 150535 54905750 ~ 54906707 (+) True XLOC_000726
TCONS_00003183 lncRNA downstream 204277 54959492 ~ 54985297 (+) False XLOC_000729
TCONS_00003184 lncRNA downstream 218980 54974195 ~ 54978775 (+) True XLOC_000729
TCONS_00001217 lncRNA downstream 325602 55080817 ~ 55084863 (+) False XLOC_000731
TCONS_00001218 lncRNA downstream 330430 55085645 ~ 55088052 (+) True XLOC_000731
TCONS_00001198 mRNA upstream 43394 54683655 ~ 54694012 (+) False XLOC_000720
TCONS_00001199 mRNA upstream 48016 54687616 ~ 54689390 (+) True XLOC_000720
TCONS_00001196 mRNA upstream 57303 54673846 ~ 54680103 (+) False XLOC_000719
TCONS_00001197 mRNA upstream 57303 54677173 ~ 54680103 (+) True XLOC_000719
TCONS_00001194 mRNA upstream 77483 54650048 ~ 54659923 (+) False XLOC_000718
TCONS_00001202 mRNA downstream 11728 54766943 ~ 54785183 (+) False XLOC_000723
TCONS_00001203 mRNA downstream 18662 54773877 ~ 54785182 (+) True XLOC_000723
TCONS_00001204 mRNA downstream 78904 54834119 ~ 54861588 (+) False XLOC_000724
TCONS_00001205 mRNA downstream 79916 54835131 ~ 54854677 (+) True XLOC_000724
TCONS_00001206 mRNA downstream 110337 54865552 ~ 54889501 (+) False XLOC_000725
TCONS_00001186 other upstream 551250 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 676196 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 1349525 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001160 other upstream 1369372 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001154 other upstream 1676209 52999832 ~ 53061197 (+) False XLOC_000682
TCONS_00001221 other downstream 373250 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001233 other downstream 538410 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001304 other downstream 2592683 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 3404936 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 4376077 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00003051 True 4075 mRNA 0.49 9 CM030139.1 10309072 ~ 10317799 (+)