XLOC_000813 (b3gntl1)


Basic Information

Item Value
gene id XLOC_000813
gene name b3gntl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57347888 ~ 57365052 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001303
CGGAAGTCATTTCTGCGCTTGCGCTCATACCTACACGAGCAACAGAGCCGAAACCAAAACACGAGCAATTATTCACCTCATTTAACTAGTATTGAAGCAGAATGAGCGCTTATCCTGGATAATGTATGTTGGACGCAAGCATTGGGCACACGTAGGCGAGTGTGTTTGAGAGATGAGCGGGAAACAGGAGCTCAGCGGAGGCTCTGAACCGGAGCCAAAGCGCTTCTGCGAGCGGAGTGGCTGTCATGGCGGCGGGGAACCAGCAGAGGGCGACAGCGACACAGTGtcagTGATCATGCCGGTGTTTAATGCGTCTGATTGGCTGGACGAGTGTCTGCAAGCGATATTGGAGCAGGATTTCCAGGGTCGTATGGAGCTGTGTGTGTTTGACGACGGCAGtacggacgGCTCCAGGGAGCTGGTGGAGAGATGGAGACCGAAGTTCGAGGACAGAGGCATTTCAGTGCTGATATCTGGACACAAATCCTCCAGCCCAcgcggagTGGGATATGCCAAAAACCAGGCTGTGAGTCAGAGCTCGGGACGATTCCTCTGCTTTCAGGAtgcgGATGATGTGATGAAGCCTCAGCGAGTCCGACTACAGCAAGAAGCTGCTGCAGCAAACCCAACGGCGATTGTGGGCTGTAAAGTGTGTCGTGTTCCTGAAGGCTCCACTGAACGCTACACCAGGTGGATCAACTCACTGAGTGCAGAACAGCTCCTCACACAggtcTACACGTCTCATGGGCCGACCGTCATCATGCCGTCCTGGTTCTGCTCGCGCAGCTGGTTTGAGAAAGTGGGTCAGTTTCACGAGGGAGGCAAGGGCGTTCCTGAAGATCTGCTCTTCTTCTATCAGAGTCTTCGTCTCGGGGGTCTCGTGCTGAGGGTGGATGAGTGTCTGCTGGTGTATCGCTATCATGAACACGCAGCGACACACTCCGTGCTGGAACAGACCATCTGGGATCTGCGTGTGGACTTCCTGCAGGAGCGAGTGCTCAGCCAATGGGATTCCTTCACCATCTGGAATGCTGGAAAACAGGGGAGGAAACTCTACCGCAGCCTGAGGCCAGACAACCAGAGCAAGgtgaaaGCCTTCTGTGACGTGGACGAGAACAAAATTAAGAAGGGCTTTTACACCTATGAGGAGTCAAAGGAGCGGCCAAAGCCGAAGATTCCTGTCCTTCACTTCAGAAACGCCTCGCCACCATTTATTGTGTGTGTCAAactggaCATGACAGATGGAGTTCTGGAGGGAAATCTTCATTCTCTGCAGCTCACAGAGGGAGTCCATTACTACCATTTCAACTGAcgacagtgtgtgtatgtgtgagagagagagagagtgtgtgcatgCGACTGTGTGTAGGTgacagagtgtgtatgtgagataGCATGTGTTTGAGGGAGACAGTCAACAAGAATGAGAGCTCAGGTACCTCATATGAACTCAACAGCGTCTTCCTGAAATGCAGAGAATGCCAAACCTTCTGTCAGAGTCTGGGAAACAGcaagaagagtgtgtgtg
>TCONS_00001304
TTCTGCGCTTGCGCTCATACCTACACGAGCAACAGAGCCGAAACCAAAACACGAGCAATTATTCACCTCATTTAACTAGTATTGAAGCAGAATGAGCGCTTATCCTGGATAATGTATGTTGGACGCAAGCATTGGGCACACGTAGGCGAGTGTGTTTGAGAGATGAGCGGGAAACAGGAGCTCAGCGGAGGCTCTGAACCGGAGCCAAAGCGCTTCTGCGAGCGGAGTGGCTGTCATGGCGGCGGGGAACCAGCAGAGGGCGACAGCGACACAGTGtcagTGATCATGCCGGTGTTTAATGCGTCTGATTGGCTGGACGAGTGTCTGCAAGCGATATTGGAGCAGGATTTCCAGGGTCGTATGGAGCTGTGTGTGTTTGACGACGGCAGtacggacgGCTCCAGGGAGCTGGTGGAGAGATGGAGACCGAAGTTCGAGGACAGAGGCATTTCAGTGCTGATATCTGGACACAAATCCTCCAGCCCAcgcggagTGGGATATGCCAAAAACCAGGCTGTGAGTCAGAGCTCGGGACGATTCCTCTGCTTTCAGGAtgcgATTCCCAGCGTTCCTGCAAACCTCACTGAGAGCTGATTCTGTCCGTCTGGAAAAGCAGAGCAGGGAAAACCCCTCAGAAATCACTGAACTGTAAAGCAGaccagaggaaacacacagaaTTGGAGTTACAGCGCTCAGAGCAcagcaggaacacacacacacacacaccctgtggCTTAATgtacactaaaacacacacacacaca
>TCONS_00001305
tgcgcacaccgtgactttaaaaaggcatcaTCAATGGATCGCAGACATTACggtgtgtttgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtttcagtcagTGATCATGCCGGTGTTTAATGCGTCTGATTGGCTGGACGAGTGTCTGCAAGCGATATTGGAGCAGGATTTCCAGGGTCGTATGGAGCTGTGTGTGTTTGACGACGGCAGtacggacgGCTCCAGGGAGCTGGTGGAGAGATGGAGACCGAAGTTCGAGGACAGAGGCATTTCAGTGCTGATATCTGGACACAAATCCTCCAGCCCAcgcggagTGGGATATGCCAAAAACCAGGCTGTGAGTCAGAGCTCGGGACGATTCCTCTGCTTTCAGGAtgcgGATGATGTGATGAAGCCTCAGCGAGTCCGACTACAGCAAGAAGCTGCTGCAGCAAACCCAACGGCGATTGTGGGCTGTAAAGTGTGTCGTGTTCCTGAAGGCTCCACTGAACGCTACACCAGGTGGATCAACTCACTGAGTGCAGAACAGCTCCTCACACAggtcTACACGTCTCATGGGCCGACCGTCATCATGCCGTCCTGGTTCTGCTCGCGCAGCTGGTTTGAGAAAGTGGGTCAGTTTCACGAGGGAGGCAAGGGCGTTCCTGAAGATCTGCTCTTCTTCTATCAGAGTCTTCGTCTCGGGGGTCTCGTGCTGAGGGTGGATGAGTGTCTGCTGGTGTATCGCTATCATGAACACGCAGCGACACACTCCGTGCTGGAACAGACCATCTGGGATCTGCGTGTGGACTTCCTGCAGGAGCGAGTGCTCAGCCAATGGGATTCCTTCACCATCTGGAATGCTGGAAAACAGGGGAGGAAACTCTACCGCAGCCTGAGGCCAGACAACCAGAGCAAGgtgaaaGCCTTCTGTGACGTGGACGAGAACAAAATTAAGAAGGGCTTTTACACCTATGAGGAGTCAAAGGAGCGGCCAAAGCCGAAGATTCCTGTCCTTCACTTCAGAAACGCCTCGCCACCATTTATTGTGTGTGTCAAactggaCATGACAGATGGAGTTCTGGAGGGAAATCTTCATTCTCTGCAGCTCACAGAGGGAGTCCATTACTACCATTTCAACTGAcgacagtgtgtgtatgtgtgagagagagagagagtgtgtgcatgCGACTGTGTGTAGGTgacagagtgtgtatgtgagataGCATGTGTTTGAGGGAGACAGTCAACAAGAATGAGAGCTCAGGTACCTCATATGAACTCAACAGCGTCTTCCTGAAATGCAGAGAATGCCAAACCTTCTGTCAGAGTCTGGGAAACAGcaagaagagtgtgtgtgtgtgcgggtgcgtgcgtgcgtgcgtgcgtgtgtgtgttttcggATACTAAAGATCTGGGAAAAGCTTCAGACTGTATTTCCCAGAGTCCTCAGCTTGAGAAACATCTCACATCCCTCTCGCACCTAGattcaaacactcacacactcacacacacacacacacacacacacacacactgtttgcatTCCTGCTGCAGCGTGTCGCTGCATTTCTCCGTCATTCCTGAGTGACGTCATTCTCAAAATAAAGCTCTTTCCCGCA

Function

symbol description
b3gntl1 Predicted to enable glycosyltransferase activity. Orthologous to human B3GNTL1 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-133 Predicted to enable glycosyltransferase activity. Orthologous to human B3GNTL1 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1).

Ensembl:

ensembl_id ENSDARG00000043431

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001303 False 1528 mRNA 0.53 12 57347888 57364790
TCONS_00001304 False 764 processed_transcript 0.53 5 57347898 57355033
TCONS_00001305 True 1605 mRNA 0.52 12 57348756 57365052

Neighbor

gene id symbol gene type direction distance location
XLOC_000812 epn3b coding upstream 7696 57331813 ~ 57340192 (+)
XLOC_000811 mycbpap coding upstream 30091 57269441 ~ 57317797 (+)
XLOC_000810 si:dkey-27j5.10 coding upstream 123666 57218301 ~ 57224222 (+)
XLOC_000809 NA coding upstream 132934 57214293 ~ 57214954 (+)
XLOC_000808 si:dkey-27j5.10 coding upstream 134526 57208005 ~ 57213362 (+)
XLOC_000814 metrnlb coding downstream 6395 57371447 ~ 57382010 (+)
XLOC_000815 NA coding downstream 43615 57408667 ~ 57436117 (+)
XLOC_000816 NA coding downstream 54296 57419348 ~ 57433416 (+)
XLOC_000817 tspan34 coding downstream 156309 57521361 ~ 57533548 (+)
XLOC_000818 NA coding downstream 176064 57541116 ~ 57565236 (+)
XLOC_000801 NA non-coding upstream 227383 57116265 ~ 57120505 (+)
XLOC_000789 NA non-coding upstream 331108 56879466 ~ 57016780 (+)
XLOC_000794 NA non-coding upstream 403499 56939347 ~ 56944389 (+)
XLOC_000788 NA non-coding upstream 469254 56873097 ~ 56878634 (+)
XLOC_000819 NA non-coding downstream 345246 57710298 ~ 57712236 (+)
XLOC_000822 NA non-coding downstream 377027 57742079 ~ 57742436 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000219_00207052_00210591 NA coding CI01000219 null 202445 ~ 210845 (+)