XLOC_000801


Basic Information

Item Value
gene id XLOC_000801
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57116265 ~ 57120505 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003256
ATCAGTCGCTGTTGATCGGCTGCTCTTCAACACGGTAAGACAAACACACGGGTATTTGCCTGATGATTAGTGTAGATGAAGCTCATATAACACATGATTTGTGACATGAGAAATATCTTGTGTTGATCTCAGTCATCAGTTGATTTACACACACTGATGTTGTGCATTAATAATCTGCAGATGTGTAAAGATCTTCCTAACACTAAGAGCTGTTTAGGGTGATGTACATTTACTGTTGATGAGTGTAGAAGTGATGATTAATGCTGGATTCTAGATAGATTTGATGCTGATGTGGCTCAGAAtggctcctgctcttcatctgatCTTTCTGCTCATCATTCACAGTGAGTCAATCTTACATTCACATCACTGCTTTATTCCTCTGCATTTACACACACCACACAATCAGACATTATCAGCCATTTTCTAATGATCTGCTGATCATCTTCTCTCTGATATAGGAAGTTAGGCTGTGCTGGAGAATCTGTTTTCTCAGTAGAGAGGCTTTAGTTAAAGTGTCATGAAACCCTCCAGTTTTAGCAGTTTTTCACACCACTGGTTTCAGCTGTGATGCACTGAAGTGCTGACacaagtcacactttattttaatgatctgtttgttgaatttaagttacattgcatctacatgccaactacttctcattagattatatgtggactgttagattggggttagtgtaagtctgggggggcgccagagcatgtcaggggaggcgcgggaaaaaatattatataataaaaatataattattaagtttaattattatatgtattttttattatatttaaacgttttaattaaacaaagcaaaaaaaataatacgtcaaaaataagaaaacctttttttacccagaaggccatagctgtgaattcgcttctgtttggcaagcccgccaatacaggtatatgcctgctaatacaatggatcggtttctgagacccccccgattcaaagccttcaagttcagggcttaaacccaaaagacgaggatatgatgatcagtatttcagtttaggatttacgtggacaggaccagctgatgatccacgacctttatgtgtggtttgtcaagatattttggctaatgatagcatgagacccgctaaacttcgactgttttgactgggatggacagttcttggatctgttctattcatattgaacaatcatcctagttttaaaaatgttatattaaaatacttgttattactctttaaataattgcactttcatgcaaatgatgataaaagtgagttaacagtctgacatctgtctgtgtctttatatatactgtgtatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgggaggaggggggcgccaatggataagttgtgtcaaaagggaggcccactgtcttagactttgaaaaaccctggtgtaagttaacatgtacctgcaaagttctttatagtcagttaaatgtctgttgagggAGCAGTATCAGtagatattaagcagtctactatTGCTtaactggaccatcaaaatataaTGTTACCCTGACACAAATATCCATCTGAAGATGGAAATTCACTGAATTTCTTTTCATGAACTTTACCacattaacactttattttgatgatccatttgacTATTAGTAGACTGTGTGCTTAAAGTCTGCtcatactgctccttcaacagacatttaactgactatatgaaACTCTGCCGGTACATTTCAGCtcaccccaaccctaacagtGGACTTATAATCTACgaaatgagaattagttggcatgtagatgcaatgcaacttaaattcaacaaactgaccatcaaaataaagtgtgtcctGTACTACTGACctacaaacacaaaaataatgctTCAGCTCACCACATAATTGTATGCaacataaacataattttggagaTGTAAAATCAACAATATTTAGAACAGAACAATTTACAGTAACAAATAATAATGTACGAACATGTAAACTACATTTGACTTCATTATggactaatgatgagttaaagCGTGTGGTAATATCATGAGTTTTCATTATTGGCtgatttaaactttaatattCTTTCTCATTCAGCAGGATTTATTTACCGTAATCTGGAGTgttcattaattaacaaacatactaacaagtttttcatttattattcatcACACTATTAGTTGATAATAAAGAAACATGCTATTAAATGcagtacattattatttattaactttttttgccCTGATATTTtccattattgttttttctcagctctctctctctctctctctctctctctctctgtttatttCTGTCCTCCATCAAGACTGAAGTCATTCACACTgagatcattattatttatattcacaagATCAGCTTAAAATATCATCTGTAATGAGTCCCTGTTTGCAATATTGAAAACCGAGTTCCTAGTGTCTTATAGTCCAGTTTACTGATAAAACTACATGTTAATCATGATTATTTCTGTGTTTAAGGGGTTACTGCTGCTGAATGGGGTATGAAATACAATGCTACAGAAATATGTGCACTACAGAACTCATCAGTGACAATCAGCTGCAATTTTACACACCCTGATGGATTGCAGATCAAGAGAGCCTTCTGGAACAAAAACGAGGTAAAACATGATGGAGAGCTTGCAGATCTGTCTGAGGACCCTGAATACAGTCAGAGGCTTCAGTATCTGGGAGATAAACAGCACAACCGCACTGTCAGACTGAGTCATGTGACAAAGAAAGATGAACATGACTATTA
>TCONS_00001287
GGGTTACTGCTGCTGAATGGGGTATGAAATACAATGCTACAGAAATATGTGCACTACAGAACTCATCAGTGACAATCAGCTGCAATTTTACACACCCTGATGGATTGCAGATCAAGAGAGCCTTCTGGAACAAAAACGAGGTAAAACATGATGGAGAGCTTGCAGATCTGTCTGAGGACCCTGAATACAGTCAGAGGCTTCAGTATCTGGGAGATAAACAGCACAACCGCACTGTCAGACTGAGTCATGTGACAAAGAAAGATGAACATGACTATTATTTCAGAATCATTACTGATGTAACAAAGGAAAAATGGATTGGCATTCCAGGAGTGCGTCTCTCTGTCACAGatcTTCAGCTGAAGTCTCCTGGGAGTGTAAAAGAGCGAGATTCAGTCCGTCTGACATGTAGAAGCAGCTGTGAACTGACTGACACACCAACATTCATCTGGTACAGAAACTCACACACATTGACTAATATTGGAGATGAACTCAACATCAGTCCAGTCAGTAGAACAGACGCAGGACACTACAGCTGTGGTGTGCAGGGACAAACCTACATCTCTTCTGCTGTTTATCTCAATGTCACATATGCTCCAGATACTCCTGTGATCTCCATCAGTGGATCTGCTGTAATAAAGGAAAACGATTCAGtgactctgaactgcagcagtgactcaaaccctcctgcagaAATCAGCTGGTTTAAAGGAGAAACATCTGTAGAATCTGGAAGAATCTTCA

Function

GO:

id name namespace
GO:0015807 L-amino acid transport biological_process
GO:0006811 ion transport biological_process
GO:0006865 amino acid transport biological_process
GO:0030425 dendrite cellular_component
GO:0097447 dendritic tree cellular_component
GO:0015075 ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000096634

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003256 False 2795 lncRNA 0.36 1 57116265 57119059
TCONS_00001287 True 741 mRNA 0.44 3 57118783 57120505

Neighbor

gene id symbol gene type direction distance location
XLOC_000800 si:ch211-1f22.14 coding upstream 56479 57050899 ~ 57059786 (+)
XLOC_000799 si:ch211-1f22.16 coding upstream 70751 57040472 ~ 57045514 (+)
XLOC_000798 si:ch211-1f22.13 coding upstream 107879 57004178 ~ 57008386 (+)
XLOC_000797 si:ch211-1f22.12 coding upstream 120122 56992262 ~ 56996143 (+)
XLOC_000796 si:ch211-1f22.11 coding upstream 134744 56972616 ~ 56981521 (+)
XLOC_000802 si:dkey-27j5.10 coding downstream 11635 57132140 ~ 57240244 (+)
XLOC_000803 si:ch73-94k4.4 coding downstream 24567 57145072 ~ 57145503 (+)
XLOC_000804 si:ch73-94k4.5 coding downstream 31421 57151926 ~ 57160654 (+)
XLOC_000805 si:dkey-27j5.6 coding downstream 55751 57176256 ~ 57180904 (+)
XLOC_000806 si:dkey-27j5.9 coding downstream 67289 57187794 ~ 57195815 (+)
XLOC_000789 NA non-coding upstream 99485 56879466 ~ 57016780 (+)
XLOC_000794 NA non-coding upstream 171876 56939347 ~ 56944389 (+)
XLOC_000783 NA non-coding upstream 215977 56819153 ~ 56900288 (+)
XLOC_000809 NA non-coding downstream 93788 57214293 ~ 57214954 (+)
XLOC_000815 NA non-coding downstream 288162 57408667 ~ 57436117 (+)
XLOC_000816 NA non-coding downstream 298843 57419348 ~ 57433416 (+)
XLOC_000818 NA non-coding downstream 420611 57541116 ~ 57565236 (+)
XLOC_000819 NA non-coding downstream 589793 57710298 ~ 57712236 (+)
XLOC_000788 NA non-coding upstream 237631 56873097 ~ 56878634 (+)
XLOC_000787 NA non-coding upstream 258800 56851035 ~ 56857465 (+)

Expression


Co-expression Network