XLOC_000815


Basic Information

Item Value
gene id XLOC_000815
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57408667 ~ 57436117 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003260
ctgggttatttacacccaattttgggtgaaatATGGAAAAATCCAATGatggttaatttttaaaaataaatgcatcagCCCAATTTTACTGGTAAAGCCTAAAAgagatacagctgcagatactcGCATCACTATAGCATACATTTTGTGACACtacaataattattcatatttttacattacattgaGTTATGTTTAGGGTTAACATGGGGCCatgtgtaataaaatacaatataattcatttattcattttcttttcagcttagtccctttattaatctagggtcgccacagtggaatgaaccgccaacttatccagcgtatgttttgagcagcggatgcccttccagctacaacccatcactggaaaatacattataatagttaatatataataatatcaacaatgcttggtataattgctgtttttacatttctgtgatagttgggtttagggttgggataggggtaaacgttaataaaatataatacatgggtaatttaaaaaatatatataaataattctcctAAACCTCCGGctgcagctgtatctcttctagctgcaacctttACTCTGTAAATGCTGCAGcaggttttgtccatattttgacagagagagagagaaagagagaaactaAGGCACATGATTGCAAAATAACACTATTACTGAAGTGATTCATGAAAATTTCTCAAATCTTTGGAAAACATTACAAAGCAAGCTATTAACAGAAATCAGCAAAGCAAGTAAAAAAGTAGATGCTGTAATTTCCTTCTCTGACACACTGAACCACAGTCTACGAAGACACACTGATGTAAATAACCACAAAGAAATGCTTCTAGTCTGCAGTGTTGCTAAATCTGACCACAACTTGCTAAAGACTGTCAACAGTGAGAAGTTAATAACGTTGAGTGGACTGTTCCTGATGTGACTTGACATGGTTAATTCATTATAATAATCTAACTCAAAGCTGCTGTAAATGTCATTACGCTTCACTTTCAATCCACTTTATGATCCCGGAGCTTTGATCATGCTGTAAAACACCGCATTATTCACCACAGCACCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003260 True 1064 lncRNA 0.35 2 57408667 57436117

Neighbor

gene id symbol gene type direction distance location
XLOC_000814 metrnlb coding upstream 26657 57371447 ~ 57382010 (+)
XLOC_000813 b3gntl1 coding upstream 43615 57347888 ~ 57365052 (+)
XLOC_000812 epn3b coding upstream 68475 57331813 ~ 57340192 (+)
XLOC_000811 mycbpap coding upstream 90870 57269441 ~ 57317797 (+)
XLOC_000810 si:dkey-27j5.10 coding upstream 184445 57218301 ~ 57224222 (+)
XLOC_000817 tspan34 coding downstream 85244 57521361 ~ 57533548 (+)
XLOC_000818 NA coding downstream 104999 57541116 ~ 57565236 (+)
XLOC_000819 NA coding downstream 274181 57710298 ~ 57712236 (+)
XLOC_000820 si:dkey-1c7.1 coding downstream 288040 57724157 ~ 57763348 (+)
XLOC_000821 LO018597.1 coding downstream 305460 57741577 ~ 57743393 (+)
XLOC_000809 NA non-coding upstream 193713 57214293 ~ 57214954 (+)
XLOC_000801 NA non-coding upstream 288162 57116265 ~ 57120505 (+)
XLOC_000789 NA non-coding upstream 391887 56879466 ~ 57016780 (+)
XLOC_000794 NA non-coding upstream 464278 56939347 ~ 56944389 (+)
XLOC_000788 NA non-coding upstream 530033 56873097 ~ 56878634 (+)
XLOC_000822 NA non-coding downstream 305962 57742079 ~ 57742436 (+)
XLOC_000826 NA non-coding downstream 490776 57926893 ~ 57931592 (+)
XLOC_000829 BX469930.2 non-coding downstream 567498 58003615 ~ 58017364 (+)
XLOC_000802 si:dkey-27j5.10 coding upstream 168423 57132140 ~ 57240244 (+)

Expression


Co-expression Network