XLOC_000829 (BX469930.2)


Basic Information

Item Value
gene id XLOC_000829
gene name BX469930.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58003615 ~ 58017364 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001323
CTGCAACGTTGTcagaataaacaaaacattagcGTCAAATATTAAACTTTGGAGACACTACACAGACGTTTTAGATAGAGTATACCGTCGATTGAAAGCTTTTAAAGTATCTCAACAAAGGATTATATATTTGTTCCGAGCATTTGGCTGCAGATTGAACGAGATGAATGAATCTGGTAAACGTTAAGGGAATTTTGTCGACAGACTGGATTTATATCCGCTACAGCTAACGTTACTCTGCAAACCATCCCAGTCGAGCTGCTGAGACTGAACCTCCTGCATCAGATTCTGCAGACGCCGCTTAAAGAACACCTCGAAGCGCAGATCGTCCTCGATCACCAGAGACGACTGCAGGCCACGATCCACAATCTGCAGAGACACGATAATATATAAATACTAAACCACTCTGATACAAAACATGCAAAGTTGGGTCGTCCTCCACTGTGATTGGACAGAGAGCTCAATATTGTCAAATGAGCAGAGCTCTGCATTTTACTCAGTCAACATTAAAACCCCACTGCTGTTGGGTccttttcatcc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096615

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001323 True 540 lncRNA 0.43 2 58003615 58017364

Neighbor

gene id symbol gene type direction distance location
XLOC_000828 si:ch211-114l13.12 coding upstream 12590 57981823 ~ 57991025 (+)
XLOC_000827 si:dkey-156m2.3 coding upstream 23554 57966831 ~ 57980061 (+)
XLOC_000826 NA coding upstream 72023 57926893 ~ 57931592 (+)
XLOC_000825 si:dkey-1c7.2 coding upstream 209886 57787642 ~ 57793729 (+)
XLOC_000824 si:dkey-1c7.2 coding upstream 223767 57774454 ~ 57779848 (+)
XLOC_000830 trim35-1 coding downstream 22187 58039551 ~ 58049515 (+)
XLOC_000831 si:ch211-114l13.4 coding downstream 48745 58066109 ~ 58076716 (+)
XLOC_000832 si:ch211-114l13.13 coding downstream 61689 58079053 ~ 58088949 (+)
XLOC_000833 si:ch211-114l13.1 coding downstream 74295 58091659 ~ 58102982 (+)
XLOC_000834 si:ch211-15j1.5 coding downstream 99536 58116900 ~ 58132014 (+)
XLOC_000822 NA non-coding upstream 261179 57742079 ~ 57742436 (+)
XLOC_000819 NA non-coding upstream 291379 57710298 ~ 57712236 (+)
XLOC_000818 NA non-coding upstream 438379 57541116 ~ 57565236 (+)
XLOC_000816 NA non-coding upstream 570199 57419348 ~ 57433416 (+)
XLOC_000837 BX927298.1 non-coding downstream 142787 58160151 ~ 58173589 (+)
XLOC_000864 NA non-coding downstream 560555 58577919 ~ 58585132 (+)
XLOC_000865 NA non-coding downstream 568989 58586353 ~ 58595767 (+)
XLOC_000871 NA non-coding downstream 629321 58646685 ~ 58669075 (+)
XLOC_000874 NA non-coding downstream 760689 58778053 ~ 58782292 (+)
XLOC_000815 NA non-coding upstream 567498 57408667 ~ 57436117 (+)

Expression


Co-expression Network