XLOC_000831 (si:ch211-114l13.4)


Basic Information

Item Value
gene id XLOC_000831
gene name si:ch211-114l13.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58066109 ~ 58076716 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001325
TCCTGTTAAAGACACCTTAAACCAGGTAAAGTGAAAGTTAAAAGGAAAAGTCGCCATTTCAATGCTTTCCTCTCAGTAAACCTGGACGGACACATTTTGTGTAAATGAGAGCAGGTGAACACTAAAATGAGTCAAAAGAAGAGTGAAGATGTTGATTCTGACTCTGAAATGAATTCTGTATCTCCTGGATCAGCATGTGAATCTTTAAAAAGTGATTGGTCTATGGAGAAGACTCCTCCTAACCTTGGCGACAGAAAAAGACAGAGATCACAGTCTCCAGAACCAAGTGGTGTCTCTAAAAAGAGAAGCAGATCAATGACCCCACCATCGGACTTCAGTGATAAACCAGTGACATTTGACTCgatgatgaaaataaaattacaaaaaattaaagaccagcacaaaaccagcatgaagaacaagtatgagaaAATATTTGAAGGAAACAAACTCAATCAGAATGAAACCCTCCTGAACCAGATCTACACCCAGCTGTACATCATAgagggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaacagCCAGAACAAAACACTCCCAACACACTCCaatctactgcaatgacatctttaaagagGAGAAAGAGCAAATCAAGACTGTTCttactaaaggcatcgctggaatcggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacacacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgaggagtgtaaagttgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagACGCTCAGAAAGTTTGTGATGTGACTGAgacttcatcagtggctgtgttgatgtcaAAGCTGATGAAAGGAgagctgcttccctctgctctcatctggatcacctccagaccagcagcagccaatcagatcccctccaaatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagtgagcagcatcaagccagcagaatcatctcacacatcagaagagcaagaagcctccacatcatgtgccacatacccgtcttctgctggatctcatccactgtgcttcagaagctcctggaagaagatcagagtgcagaaatccctcaaactctgactgaaatgtacatccacttcctgctgattcagatcaacatgaggaatcagaagtatgaagagagagatccagagaaactcctgcagtccaacagagaaGTGATtgtcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcgtAGACGTCTCTGACgcctcagtgtattctgggatttgcactgagatctttaaggaggaatctgtgattcagcagaggaaagtctacagcttcatccatctgaGTGTTCAGGAGTTCCTCGCTGCTTTCCATGTGTTTTACGTTCATGTAAGCAGCACTGCAGAAGCATCTTTTGATTCATTAGAAAATCTCCATAAAAGAATCATTGATAAAGCCATTGAGAGTGAgaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctactgacacacacagagaagagctcagagagcatcaggagaagcacacagtacattaaagagaAGATCAGAGATGGACATGGACTCTCcactgaaagatccatcaatctgttcctctgtctgctggaagtgaaagatcagactctgtccagagagattcaggagtttgtgaaatcagacaaacagtcagagaagaaactctctcctgctcactgctcaacaatcgcCTACATGCTTCAGATGTCAGAGGAGGTGCTGGATGAGCTGGAGCTCCAGAAATACAACACATCAGATGAGGGCAGAAGAAGACTGATACCAGCCGTCAGCAACTGCACAAGAGCTCTTCTTGCTGGCTGTAATCTCTCTGCTCAGGATTGTGAAATTGTGTCGTCAGTTcttcaatcctcaaactgtgtcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgatggactgaagagtccaaactgtcAGCTGGAGATACTGAGGTTGTCTGggtgtatggtgacagaggaaggctgtggttttctatcttcagctctgagttcaaacccctcacacctgagagagctggatctgagctacaatcacccAGGACAATCAGGAGTCCAGCTGCTCCAACACACACTGGAGGATCCACACTACACACTGCAGAAACTCAATTTAGATGGTGGAGGACACTTCAGGATCACATTAGGACTGAGAAAATATGCCTGTTTTCTcacactggatccaaacacagcacacagtcATCTGGTCTTGTCTGACGGGAACAGAAGAACAACACATATAAAAGATCTTCAGTTGTATCCTGATCACCCAGACAGATTCGAGCACCACGAGCAGGTTCTGTGTAGAGAGACTCTgactggacgctgttactgggaagTTGAATGGAGGGGATCGACCTATATAGCAGTGGCCTACAGAGGAAACAGCAGGAAAGGAGGAAGCGACTGTCGGTTTGGACTCAATGAAAACTCCTGGAGTCTCTATTGTTGTGAGAATATTTACATTGTCTGGCACAATAATAAGAGCACAAACATTGCCACTCCTTCACCCCAGTCTAATAGAGTAGGGGTGTATGTGGACGTGCCGTCCGGCTCTCTGTCCTTCTACAGCatctctaaaacacacacactcacacacttataTACAATCAACACCACATTCACTGAACCCCTTTATGCTGGATTCAGAGTTTATCCTGAATCTGCAGTGTCTTTGTGCTagatttaacacacacaca
>TCONS_00001326
ATGAGTCAAAAGAAGAGTGAAGATGTTGATTCTGACTCTGAAATGAATTCTGTATCTCCTGGATCAGCATGTGAATCTTTAAAAAGTGATTGGTCTATGGAGAAGACTCCTCCTAACCTTGGCGACAGAAAAAGACAGAGATCACAGTCTCCAGAACCAAGTGGTGTCTCTAAAAAGAGAAGCAGATCAATGACCCCACCATCGGACTTCAGTGATAAACCAGTGACATTTGACTCgatgatgaaaataaaattacaaaaaattaaagaccagcacaaaaccagcatgaagaacaagtatgagaaAATATTTGAAGGAAACAAACTCAATCAGAATGAAACCCTCCTGAACCAGATCTACACCCAGCTGTACATCATAgagggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaacagCCAGAACAAAACACTCCCAACACACTCCaatctactgcaatgacatctttaaagagGAGAAAGAGCAAATCAAGACTGTTCttactaaaggcatcgctggaatcggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacacacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgaggagtgtaaagttgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagACGCTCAGAAAGTTTGTGATGTGACTGAgacttcatcagtggctgtgttgatgtcaAAGCTGATGAAAGGAgagctgcttccctctgctctcatctggatcacctccagaccagcagcagccaatcagatcccctccaaatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagtgagcagcatcaagccagcagaatcatctcacacatcagaagagcaagaagcctccacatcatgtgccacatacccgtcttctgctggatctcatccactgtgcttcagaagctcctggaagaagatcagagtgcagaaatccctcaaactctgactgaaatgtacatccacttcctgctgattcagatcaacatgaggaatcagaagtatgaagagagagatccagagaaactcctgcagtccaacagagaaGTGATtgtcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcgtAGACGTCTCTGACgcctcagtgtattctgggatttgcactgagatctttaaggaggaatctgtgattcagcagaggaaagtctacagcttcatccatctgaGTGTTCAGGAGTTCCTCGCTGCTTTCCATGTGTTTTACGTTCATGTAAGCAGCACTGCAGAAGCATCTTTTGATTCATTAGAAAATCTCCATAAAAGAATCATTGATAAAGCCATTGAGAGTGAgaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctactgacacacacagagaagagctcagagagcatcaggagaagcacacagtacattaaagagaAGATCAGAGATGGACATGGACTCTCcactgaaagatccatcaatctgttcctctgtctgctggaagtgaaagatcagactctgtccagagagattcaggagtttgtgaaatcagacaaacagtcagagaagaaactctctcctgctcactgctcaacaatcgcCTACATGCTTCAGATGTCAGAGGAGGTGCTGGATGAGCTGGAGCTCCAGAAATACAACACATCAGATGAGGGCAGAAGAAGACTGATACCAGCCGTCAGCAACTGCACAAGAGCTCTGTGA

Function

symbol description
si:ch211-114l13.4 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-113 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

Ensembl:

ensembl_id ENSDARG00000078246

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001325 False 3055 mRNA 0.45 7 58066109 58076716
TCONS_00001326 True 1998 mRNA 0.44 2 58067815 58070078

Neighbor

gene id symbol gene type direction distance location
XLOC_000830 trim35-1 coding upstream 16594 58039551 ~ 58049515 (+)
XLOC_000829 BX469930.2 coding upstream 48745 58003615 ~ 58017364 (+)
XLOC_000828 si:ch211-114l13.12 coding upstream 75084 57981823 ~ 57991025 (+)
XLOC_000827 si:dkey-156m2.3 coding upstream 86048 57966831 ~ 57980061 (+)
XLOC_000826 NA coding upstream 134517 57926893 ~ 57931592 (+)
XLOC_000832 si:ch211-114l13.13 coding downstream 2337 58079053 ~ 58088949 (+)
XLOC_000833 si:ch211-114l13.1 coding downstream 14943 58091659 ~ 58102982 (+)
XLOC_000834 si:ch211-15j1.5 coding downstream 40184 58116900 ~ 58132014 (+)
XLOC_000835 si:ch211-15j1.4 coding downstream 60304 58137020 ~ 58145365 (+)
XLOC_000836 si:ch211-15j1.3 coding downstream 73284 58150000 ~ 58155977 (+)
XLOC_000822 NA non-coding upstream 323673 57742079 ~ 57742436 (+)
XLOC_000819 NA non-coding upstream 353873 57710298 ~ 57712236 (+)
XLOC_000818 NA non-coding upstream 500873 57541116 ~ 57565236 (+)
XLOC_000837 BX927298.1 non-coding downstream 83435 58160151 ~ 58173589 (+)
XLOC_000864 NA non-coding downstream 501203 58577919 ~ 58585132 (+)
XLOC_000865 NA non-coding downstream 509637 58586353 ~ 58595767 (+)
XLOC_000871 NA non-coding downstream 569969 58646685 ~ 58669075 (+)
XLOC_000874 NA non-coding downstream 701337 58778053 ~ 58782292 (+)

Expression


Co-expression Network