XLOC_000827 (si:dkey-156m2.3)


Basic Information

Item Value
gene id XLOC_000827
gene name si:dkey-156m2.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57966831 ~ 57980061 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001320
ACAGAAAATGGAGGCCATGAACAGGTTGATGACTGATATGCTTGAGGAACTTGTGGAGGCAGAGCTCAAACAGTTCACCAGGCAGCTGTGGATGGGTGTGAAACCAGGCGTCGATCCCATTCCTCGTGGAAAGCTGGAGAATAAGGACCGTCAGGATGTGGTGGACTGTATGGTGCAGCATTACAGCAAGGATGCTGGGAAAATCGCTGTACAGGCTCTGCGCAGCATCAAGCAGAACGAGCGTGCAGATCGTCTCGAGTTGAATCTGCGGAAAGATGATGACTTCTTAGGAGAAGTCCTCAAAAAACACAAGGAAAGCATAAAGGCCAGTGTAGATGTGTTTGAAGGCAAGAAAGACAACAAAACAGACATCAACAAAGTGTACACCGAGCTGTTCATTACTGAAGGGGACATGACAGACGTCTGCAAAGAACACGAGGTTCAGAAGTTTGACCTAGCCTTGCAGATGCCAAGATCTGAGGACAAACCAATCGACTGTAATGAAATATTCAATTTGTTGAGGGGGAAGGACAAGGGAAACGTTGTTCTGACCAAAGGCATCGCCGGCATTGGAAAGACGTTCTCTGTGAACAAGTTCATCCTGGACTGGGCTGAAGGAAGAGCCAATCTGGATGTGGACTGTATGTTtctgcttccatttcgagagatTAACTTGATGATAAAAGATGGAGATGTTAGTCTTCACAAGTTTCTGTTGAAACTTTTCCCTGACATCACTGGCGTGGAAACGACACCGTTTTATGAAAAATGCAAACTGCTGTTCATCTTTGATGGGCTTGATGAGAGTCGCCTGGATTTGAACTTTAACCTTAGTTCAGTGGACGATGTCCATTCTTGCGCATCCATCGATGGTTTATTTACAAGCCTCATCAAAGGAAGGCTGCTTCGCTCATCTCTCATCTGGGTGACCTCACGACCCGCAGCGGCCAATCGGATCCCTTCCTACCATGTCGGGTTGTTCACTGAGGTGCGCGGATTCACTGACAAGCagaaggaggagtacttcagaaaaaAGGTCCCAGATGAAGATCAAGCTTCCAGGATAATCTCCCACATCCGGACGTCCCGCAGTCTCTACATCATGTGCCACATTCCCGTGTTCTGCTGGATCATCGCCACCGTTCTTCAGGatattctccagaagaacaaaggGGAGGACATTCCCTCCACCCTcactgagatgtacatccacttcctgctgatacAGATGAACATCAAGAACCAGAAGTATGATGAAAAACTGATACGGGATCGAACAGAGCTGTTGGGTTCAAACAGAGACATGATTTCTAAGTTGGCCAAACTGGCGTTCGAACAGCTGAAGAAAGAGAACGTCATGTTCTACCGGGAGGATCTGGCAGCATGCGGCATTAACGCAGATGAAGAGTTCACAGGACTgtgcactgagatcttcaagaAAGACTCTGTCCTGCATGAGCTGAAGGTGTATTACTTCATACACTTGAGTGTGCAGGAGTTCCTTGCTGCGCTGCATGTGTTTCTTTGCTACTTGGAGCTGGAAAAAGACATGAACTTGACAGATAGTGACCTGATGTTCTTCCTGGAGGATTCACGTCCAAAACAGAAGGAGCTGTTGCACGTTCTGCTGAGGAAGGCGATCGATAAAGCGGAGAAGAGCGATCGAGGGCATTTTGATCTCTTtctgcggttcctgctgggcaTTTCTCTCGAGTCCAATCAGAAGCTACTTATCGGCATCCTGAACGAAACAAAGAACAGTAAACAAAGCATCAGTAAAACCGTTCAGTACCTCAAGCAGTTGCAAAACAATGACAAATGCCCAGATAAATCTATCAACCACTTCTTCTGCATCCTGGAACTGCAGGACAGAACCCTGTACCAACAAATCATGAAATATCTGAGGTCAAAGACAAATCGGCCAAAAGTCATGTCCAGATCAAACTGCTCAGCGCTGGTGTATGTGCTTCTGATGTCACAGGAAGTGCTGGACAAATTCAACCCAAAGTTGTTCAACAAAACATATGCGGGATGCAGGATTCTCGTGCCAGCCGTGAGATGCAGCCGCAAGGCCCTGTTTTCAGACTgtggactgacagaaacatgctTTGAAACAGTGGCTTTGGCTCTACAGCTGGAGAACTGTCCTCTGGTTGAGCTGGACCTGAGCTACAACTACAGTCTGGAGGCGGCAGTGAACGTGATGTGTGCTGGACTCAAGAGCCCACACTGTCACCTGGAGAGCCTCAGGTTGGCCGGgtgtcatttagggcaggacagCTGTATGCAGGTGGTCTCTGCACTTCAGAGTATCTCACATCGTCTAAAAGAGCTCGACCTCAGCGGAAACGATCTGCAGGACTCAGGACTCCAAAAGCTCCTACAAGGGATGGAGAACACAGAGAAAAGACTTCAAGTCTTGAGGTTGAGCTGGTGTAACCTCACTGAAATGAGTTGTCAGCAGCTTTCCACGATTCTGAGCTCCAATTCGGTCTttagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgatggactgaagagtccaaactgtaaacTAAAGATACTGAGgttgtctggctgtatggtgacagaggaaggctgtggttttctatcttcagctctgagttcaaacccctcacacctgagagagctggatctgagctacaatcacccAGGACAATCAGGAGTCCAGCTGCTCCAACACACACTGGAGGATCCACACTGTAAACTGAAGACACTCAAAACTGATCCTATGGGTGACCACTTGATGAAACCCGGGATAGTGAAGTATGCATTCAATCTCACTCTGAATCCAAACACAGCTCACGTTCATCTGCTTCTCTCTGACGGAGACAGAAAGGTGACTCTAAAAGAGAAACAGCCGTATCCTGATGATCCGGAGAGATTTGAAGAGCATCATCAAGTGCTGTCCAGAGAGAGTCTGTccggacgctgttactgggagactGAATGGACGGGTCAGGAAGGCACGGTCGGTGTGGCGTATGAAAGCATCCCGAGGAAACCTGATGATCTTTTGTATGGCAGGTGCATGCTTGGAAACAACATCATTTCATGGAAGATTACGTGTGGAAGTCGCACACATGTTTCACACGCTGAAGAAGATATTACTGTGAAATCTCCATCCTCTGGCTCATGTAAGAGAGTGGGTGTGTATGTGGACACAACCGCTGGTGTTTTGTCCTTTTACCACGTCtttgacacactcacacacttgtaCACCTTCCTCATGCCTTTCACACAGCCTCTCTATGCAGCATTCAGAGTGGACGGCGAATCTGTGTCCATCTGTCCGATACCGTAAACAGAGGTTTTTAAATCCGAAGTAGAGGATGGTATTTTTTTGGGAATCGCACGGGTCACGGGATTTCAGTGGGATTGGAGTCATCTTTGCTTTTAATCATGGGATTGGGACAGTACAGGATAAAATAGTTTACGGGAGCAGATGGGGAGCAGGAATCAACCAATAGGAAAATGGCAACATAAAAAAATGCACTGCCATTTTGTAGTTTCCTTTTCATACGAATacaatcaacccaagctcattctggaaacgtagccccgcggacgtttctggagaacgcgatttacgtggccagaggtacgtaaaggccgcgtttgtttttttttgagcgaacgctgcggggcggtgtggtgccgctccgcccctcctgttcgcgctcgccggccgacggctcgcctccgagtggagggctttcccgatgcaatcagtttgtccgcttagctcacagcgttgcgtcggcggagcggaggccccggaggaggagccggagccggagccggccacggtggacgacgaccgggatcaaggccggggaacagcaggtttcggaaatcaggtaagacgaaaaacggaatccgaaaaataagggcgagaacgtggcgggatccgaaaacgcggtcgaaatcgaagacgagggcttttgcttttttttttccgatccggcggcttttcgcgtgaGAACGGCGCGAGCGCGAacgcgcgcgctcccgagaggcgcccgagacgcgaaaaagcacgcacagcggcctctcgcggatccgcgaaaacaataAACGCTccaatatgtacctcccgggacgtaaatcgcggtccgcagaaacgtccgcggggctacgtttccacaatgagcccgggttgaaaacAATGCAACGCAATTTAAAACTAACTGCACAATCGCTTGCTAACACCCGCGGAGAAATTGATGTGGTGAAAAAATTCTTTGCAGAGGTCATGACATTAACAGAACTAGTCAGGATGGAAATATTAATGAAGTTCATGAGAGTAAACTGCGATGATGATAGTACGCCCCGTATGCTGCTTGTAAAACATGCTTAATCTTAGTCAAGTACACCAGTTGATTCTGGGACGAGCAATCTGAAAAGGCACACTTGTTAAGTCTCGTCTGACCGACAAAATTGCTCACAACCATCACAGGTTCAGTGTTTTCACCctaagtaaattaaatttaatgaatCGAAttgaggtgacgcagtggcgcagtaggtagcactgtcgccttgccgcagaaaggtcgctggttcgagcctcggctgggtcagttggcgtttctgtgtggagtttgcatgttctccctgcatttgcatgggtttcctccgggtgctccagtttccccacaatccaaaaacatgcggtagaggtgaattgggtaggctaagggtgctttcacagttGGTTTTATTGCCTGGATCGTACCCAAGTTTGATTGTCCTCCCTTGCCACCTTCTGCCACCCAGGCTCATTCCgaaaatgtagccccgcggatgtttctagAGACTGCAATTTAAGTGGCCGGAGGTACGTGTGGccgaattttgttttttttcgagcgaacgctgtggGGCAGTGTAACGCCGGCTGTGATGGCTcgcctctgtgtggagggctttcccgccgcaaccagtttgtccgttTAGCTCGCAATGTTACCTCGGAGGGGCGGAGGCCTAGAGGAGGAGGAGCTGCCGGCCGCGGCAAGGACGACTGGGATCGAgttcggggaagagcggttccagaattcaggtaagatgaaaaacagaatccaaaaaataaaaacgaatGAGTTCAGGacagggcgagaatgcggcgaaACCCGAAAAGGCGGTCAAAATCGgatgagggcttttgcttttttttttttgcttttgtaaatCAACGTTtgggacagacggtcgctcgacagtggcctctggagGCTTTTCGCGtgagaacagcgtgggcgcgaaCGGAGCGTGCTCCCAAGAGGCGTTTGAGActtgaaaaagcgcacacagcggcctctcgcggattcgcgaaaacaaaaactgcacaaattcgtacctcccgggacatattttgtGGCCTCTAGAAACATCTGCTGGGCTATGTTTCCacgatgagcctgggttgatctTCTCGGTTGgcttgtgttcacactgtcttttttccttctgaaccctggCCCGCTTGCGTTATCGAGCTGCCATTCTGTTTATAGCttgctaggtgacggtcatgaaagcaaagcgccaaaatggaaagacgcCCACATATCACGGTcgtcctgcttttactgaatcttttggatTTGGTCATACAGAAAGCGACTTACGTCCacgttcagaacatcacacagtgtctgcaaaAGCTGTTTTTGAAGGAGACAAGTAGAAATTAttactgtgtttgccctggctcaatcatgcttgtcaccaaggtacgattcctgacacacacacatacagacacacacacacaaatgaacataATGAAAActatagtttgttgtacagtcggtggttcacttccgttatttggtacgataCGATACCAGAGTTTACATGAAccataccccagaccacctctttcaggcggactcgagTGCGGTTTGTGGGTgcacacccgagttcagaagacactagctaaacgtactgcACTATGACATCGAACGATcctgggtgcggaccaaaagtgctagtgtgaaagcacccgaaattgcccgtagtgtctgagtgtgtatggctgtttcccagtgatgggttgcagctggaaggacatccgctgcgtaaaacgtgctggataagttggtggttcattccgctatggcgaccccggattaaattGAAACTAGAAGAATGATTGTTTGCATGTGTGGTGGTGAGGAATGAGGACTAGAATATTTGCTGTTCATTTTTCATGTCAACTTTCTCTATAAAACCAGAATCATACTGACTATTTTCATATATTGAGGATGCATATAATGCATACAGCCACATGTTTTAATTTGAATCAAATAAGCAGATacaaacattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacatctTTTGTTTCtgcttatttgcttattttttatttttcaaagggTGTCAATATTTATTCGATGTTTAAATTGTGCATGCTGCATTTCTCTCTTTCATTATGTGCATATTGGATGAAAattgttaacatgttaattaaaaaacaaaacttttcaataAATGAGTAAAATGCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000078620

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001320 True 6595 mRNA 0.48 8 57966831 57980061

Neighbor

gene id symbol gene type direction distance location
XLOC_000826 NA coding upstream 35239 57926893 ~ 57931592 (+)
XLOC_000825 si:dkey-1c7.2 coding upstream 173102 57787642 ~ 57793729 (+)
XLOC_000824 si:dkey-1c7.2 coding upstream 186983 57774454 ~ 57779848 (+)
XLOC_000823 LO018597.2 coding upstream 216464 57744400 ~ 57750367 (+)
XLOC_000821 LO018597.1 coding upstream 223438 57741577 ~ 57743393 (+)
XLOC_000828 si:ch211-114l13.12 coding downstream 1762 57981823 ~ 57991025 (+)
XLOC_000829 BX469930.2 coding downstream 23554 58003615 ~ 58017364 (+)
XLOC_000830 trim35-1 coding downstream 59490 58039551 ~ 58049515 (+)
XLOC_000831 si:ch211-114l13.4 coding downstream 86048 58066109 ~ 58076716 (+)
XLOC_000832 si:ch211-114l13.13 coding downstream 98992 58079053 ~ 58088949 (+)
XLOC_000822 NA non-coding upstream 224395 57742079 ~ 57742436 (+)
XLOC_000819 NA non-coding upstream 254595 57710298 ~ 57712236 (+)
XLOC_000818 NA non-coding upstream 401595 57541116 ~ 57565236 (+)
XLOC_000815 NA non-coding upstream 530714 57408667 ~ 57436117 (+)
XLOC_000837 BX927298.1 non-coding downstream 180090 58160151 ~ 58173589 (+)
XLOC_000864 NA non-coding downstream 597858 58577919 ~ 58585132 (+)
XLOC_000865 NA non-coding downstream 606292 58586353 ~ 58595767 (+)
XLOC_000871 NA non-coding downstream 666624 58646685 ~ 58669075 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000258_00096312_00110058 NA coding CI01000258 null 96312 ~ 111157 (+)