XLOC_000819


Basic Information

Item Value
gene id XLOC_000819
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57710298 ~ 57712236 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003262
AAGCTCTCAGCTCATCTTCACACACGTGGCCTGATCTGAGTTCATCAGCTGTAAATCCACAGTCCACCATCAGCACATTCACAGATCATCACGTCTCCTCAGGTCAGCTCATCTCTCTGTGTCTCTGTTATAATCTCTGTCATTTCTGTTATATACAGCTTAAATCAACGTCTAAAACACTTCACACATTCACCGCACTGCATTTACTGCATCTCACATTAAACTTATATAACCTGTCCATCAGAACAAGACCTGAAAGCATGTCATTAACAATCATCATATCCCTCTTCCCAGTGTTTTATGTCAAAATACGAAAAATGTTAACCAGCACTGAggtcttttttgtgttttttgtgtgcattttcttttatttatttactgtgtcTATAAACATATTCTGATATGGTGCTCTAATCTGATTCctgcattttttattatcattatttgccTCTCCATCAGTCTGTATGTCATTATGATtgtcattagtattattatttgtctctctccatccatctgtGTTTTCCTCTTGTTTATTTCAGACTCGTTCATGATCATCATCACTGCGGAGGCTTCAGTTCTGCTCCTGATTGGTCTCCCGCTGCTCATCCTGGCTGTACGGCAGAGAAAGAAGACTGACGGTAATATCTGACAGGGTTTAGTTCAGCTTTAGGACACATTAGACTGGGTTAAAGATCTGAGAAAGACTAACACTGATGTGCTCTACAGGTCTGCACTCCTCAGAGTTCACTACAAGCATTTATCAACAGGTGAGATGGCAGAAAGGCTTAATTTTGGTTCAGTGTGGGCTTTAGCTAGAGTCTCTCTTTGATGCCCTGGGCTCTGCATTGGTTTGGGAAATTACAAATTGAACCAATTAAATGATTACAACTGGCTTAAGATTGAAATGAAATTCGGAAAATGTGTAAACCAGCAGAACCTgggaattacaaaaaaaaaaaaaaaagaaatgtttacttttataattgttctcCATGATTTATATAGAGTTGATTTTATTTCAGCAATGTAATACTGTGACTGCAGTGATGTACACTGATTTAACACTGCATTTAACTATACTATACAATAACAATGTACATGCATTTAACTATATTTATAGCTACAAActggttattttaaaattttgattgtttaattgtttaatagtGATTTTCCTGTGATTTCAGATGAAAGATAATCCAgcagacagagacacacacactactgtgtGTTACAGCTGTGTTTAAGTAAAGTCTatttttgagaggatcacgtgcttatgattgtccacggcTGGTCTCGCATTAGCATCAGAAGATTCCTATCTCACCATAAACAACCAGAGTTTCTTACAGCAGTCATTTTCGTCTTCAAGGATCCCCCCTGTCCACCCCTAATCTTCTCTTTTCCTAGATGActcggtggctcagtagttagcactgttgcctcacagcaagaatgtcactcaTTCAAGCCCtgaagtttctgtgtggagtttacatgttctccctgtgcttgtgtgtgtttcccTTGGGTTCACCGGTTTtctaccacagtccaaagacatgcgacataGATAAGCTCTTAGCCAGCAGTATACCTCTCCATAGCAATCCATGTAGTCTGTCTTTAGCCTTAAAtaaggggagttctcaagatttACCTGAGCTCAGAATCCCCTCTAGCCCTGCAAACCTGAGGGAGCCTTGAGCTTGAgcatcttatgagctcagggctctctcccgggacagcatgccaaactagctttattatcaatcatcagctaagtgtgaactcttgaatgaacTACTATAACAAATGAGACTCAAGAACTGATTAAtcaacaacaccaacaacacAAACCAGCTCACACTGATTTACTCCATCATATAAGCTTATTAATAACCAAAATAACTGAATAATCAATCATGTTATACTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003262 True 1939 lncRNA 0.39 1 57710298 57712236

Neighbor

gene id symbol gene type direction distance location
XLOC_000818 NA coding upstream 145062 57541116 ~ 57565236 (+)
XLOC_000817 tspan34 coding upstream 176750 57521361 ~ 57533548 (+)
XLOC_000815 NA coding upstream 274181 57408667 ~ 57436117 (+)
XLOC_000816 NA coding upstream 276882 57419348 ~ 57433416 (+)
XLOC_000814 metrnlb coding upstream 328288 57371447 ~ 57382010 (+)
XLOC_000820 si:dkey-1c7.1 coding downstream 11921 57724157 ~ 57763348 (+)
XLOC_000821 LO018597.1 coding downstream 29341 57741577 ~ 57743393 (+)
XLOC_000822 NA coding downstream 29843 57742079 ~ 57742436 (+)
XLOC_000823 LO018597.2 coding downstream 32164 57744400 ~ 57750367 (+)
XLOC_000824 si:dkey-1c7.2 coding downstream 62218 57774454 ~ 57779848 (+)
XLOC_000809 NA non-coding upstream 495344 57214293 ~ 57214954 (+)
XLOC_000801 NA non-coding upstream 589793 57116265 ~ 57120505 (+)
XLOC_000826 NA non-coding downstream 214657 57926893 ~ 57931592 (+)
XLOC_000829 BX469930.2 non-coding downstream 291379 58003615 ~ 58017364 (+)
XLOC_000837 BX927298.1 non-coding downstream 447915 58160151 ~ 58173589 (+)
XLOC_000864 NA non-coding downstream 865683 58577919 ~ 58585132 (+)

Expression


Co-expression Network