XLOC_000817 (tspan34)


Basic Information

Item Value
gene id XLOC_000817
gene name tspan34
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57521361 ~ 57533548 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001308
ACTGAGATCAGCATCAGCGGTGGACAGGTAACACTTATTATACAGGAACCAGGAAAATACGTCAAAATGTGCTGCAAGGGTTTCCTCAAAGTCATGATGTTTGTCTTCAACGGCATCATCTTCCTGGCGGGCGCTGCTGTCCTGGCGGTGGGCATCTGGGTGGCCGTGGACAGAGTTTCTCTCCTGGGTTTTCTGGAGCACATTGAAGATGCTCCTCCTGAACTGGCGCAGCTGGCCAACATCGGGTACCTGCTGATCGGAGTCGGGGCGTTTCTGGCCATCATGGGCTTTCTGGGATGCTGCGGAGCCGTGAAGGAAAGCAAATGCATGCTTCTCACTTTCTTCATCATCGTGCTCATCATCTTCCTCGTGGAGGTGGCGGCCGCTGTGGTGCTCTTCGTCTTTGAGCCTGTGGTTCAGGAAACTCTGAATGAAATCGGACAGAAAGTGGCTAAAAGCATTAAGGATAATTATGGAAAGGATGAGCCTTTCAGCTCAATCTGGAACACCACTATGAATGAGCTGAAATGCTGTGGATATAACAACTACACTGACTTCAGCGGCTCTAATTTTGTGGAAGAAACATCGATGTATCCTGAAAAGTGTTGCTCGAGCGGTTCACAGCGATGTGATGAAAGGGCAGCAGAAGATGCGGTTATCGCGGGCTGCTTTAGGACATTAGTGAAGCTGATTGAGGATAATGCACTCCTGCTGGCTGGTGTGGCTTTGGGAATCGCAGCTTTAGAGATTGCAGCAATGGTTGTTTCCATGATCCTCTACAAGAACGTAGGGAAATGAGAGCAGGACTGACTACAGAGATTTGTGTTTACTGTACATCACTGTTTACTCTAGCCTTTTCTATTTGCTAATTTAATAAAAGTCATGTAAATAATATACTGGCTGCAGTATGAATGACATTTGCACAGCTTATTTGTTctcttttaaatgattttttaaaacttttttttaacctcaagtaaatgtaaattttgaCCTCTGCTTAACTACTAAAATACGATCCAGACTTTAAAATATCTATATCTAATGCGATGTTGTGTTGAATACTACAGCTCATTAAAGATCACCACATATTTTCAACAGTATCCTTTTTTATGTATAATTAAATACATGAACAATCTTCATctggaaatattttaatatattcgtTTCATTGTATGaataaaaatctgtattttt

Function

symbol description
tspan34 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TSPAN16 (tetraspanin 16).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-202 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TSPAN16 (tetraspanin 16).

Ensembl:

ensembl_id ENSDARG00000103951

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001308 True 1197 mRNA 0.42 8 57521361 57533548

Neighbor

gene id symbol gene type direction distance location
XLOC_000815 NA coding upstream 85244 57408667 ~ 57436117 (+)
XLOC_000816 NA coding upstream 87945 57419348 ~ 57433416 (+)
XLOC_000814 metrnlb coding upstream 139351 57371447 ~ 57382010 (+)
XLOC_000813 b3gntl1 coding upstream 156309 57347888 ~ 57365052 (+)
XLOC_000812 epn3b coding upstream 181169 57331813 ~ 57340192 (+)
XLOC_000818 NA coding downstream 7568 57541116 ~ 57565236 (+)
XLOC_000819 NA coding downstream 176750 57710298 ~ 57712236 (+)
XLOC_000820 si:dkey-1c7.1 coding downstream 190609 57724157 ~ 57763348 (+)
XLOC_000821 LO018597.1 coding downstream 208029 57741577 ~ 57743393 (+)
XLOC_000822 NA coding downstream 208531 57742079 ~ 57742436 (+)
XLOC_000809 NA non-coding upstream 306407 57214293 ~ 57214954 (+)
XLOC_000801 NA non-coding upstream 400856 57116265 ~ 57120505 (+)
XLOC_000789 NA non-coding upstream 504581 56879466 ~ 57016780 (+)
XLOC_000826 NA non-coding downstream 393345 57926893 ~ 57931592 (+)
XLOC_000829 BX469930.2 non-coding downstream 470067 58003615 ~ 58017364 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000219_00356816_00360009 TSPAN34 coding CI01000219 null 356484 ~ 360363 (+)