Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001308 |
| length | 1197 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 8 |
| gene id | XLOC_000817 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 57521361 ~ 57533548 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0003674 | molecular_function | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060825-202 | Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TSPAN16 (tetraspanin 16). |
| ensembl_id | ENSDART00000169620 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003260 | lncRNA | upstream | 85244 | 57408667 ~ 57436117 (+) | True | XLOC_000815 |
| TCONS_00003261 | lncRNA | upstream | 87945 | 57419348 ~ 57433416 (+) | False | XLOC_000816 |
| TCONS_00002887 | lncRNA | upstream | 92246 | 57419370 ~ 57429115 (+) | True | XLOC_000816 |
| TCONS_00003259 | lncRNA | upstream | 281117 | 57238434 ~ 57240244 (+) | True | XLOC_000802 |
| TCONS_00003258 | lncRNA | upstream | 283755 | 57237308 ~ 57237606 (+) | False | XLOC_000802 |
| TCONS_00002888 | lncRNA | downstream | 7568 | 57541116 ~ 57565236 (+) | False | XLOC_000818 |
| TCONS_00002889 | lncRNA | downstream | 29294 | 57562842 ~ 57565236 (+) | True | XLOC_000818 |
| TCONS_00003262 | lncRNA | downstream | 176750 | 57710298 ~ 57712236 (+) | True | XLOC_000819 |
| TCONS_00002890 | lncRNA | downstream | 208531 | 57742079 ~ 57742436 (+) | True | XLOC_000822 |
| TCONS_00003263 | lncRNA | downstream | 393345 | 57926893 ~ 57931592 (+) | False | XLOC_000826 |
| TCONS_00001306 | mRNA | upstream | 139351 | 57371447 ~ 57382010 (+) | False | XLOC_000814 |
| TCONS_00001307 | mRNA | upstream | 139514 | 57371555 ~ 57381847 (+) | True | XLOC_000814 |
| TCONS_00001305 | mRNA | upstream | 156309 | 57348756 ~ 57365052 (+) | True | XLOC_000813 |
| TCONS_00001303 | mRNA | upstream | 156571 | 57347888 ~ 57364790 (+) | False | XLOC_000813 |
| TCONS_00001302 | mRNA | upstream | 181169 | 57331829 ~ 57340192 (+) | True | XLOC_000812 |
| TCONS_00001309 | mRNA | downstream | 190609 | 57724157 ~ 57757768 (+) | False | XLOC_000820 |
| TCONS_00001310 | mRNA | downstream | 208029 | 57741577 ~ 57743393 (+) | True | XLOC_000821 |
| TCONS_00001311 | mRNA | downstream | 210852 | 57744400 ~ 57750367 (+) | True | XLOC_000823 |
| TCONS_00001312 | mRNA | downstream | 215698 | 57749246 ~ 57757768 (+) | False | XLOC_000820 |
| TCONS_00001313 | mRNA | downstream | 219176 | 57752724 ~ 57757768 (+) | False | XLOC_000820 |
| TCONS_00001304 | other | upstream | 166328 | 57347898 ~ 57355033 (+) | False | XLOC_000813 |
| TCONS_00001233 | other | upstream | 2224110 | 55293625 ~ 55297251 (+) | False | XLOC_000739 |
| TCONS_00001221 | other | upstream | 2392782 | 55128465 ~ 55128579 (+) | True | XLOC_000733 |
| TCONS_00001186 | other | upstream | 3335205 | 54186039 ~ 54186156 (+) | True | XLOC_000710 |
| TCONS_00001180 | other | upstream | 3460151 | 54053104 ~ 54061210 (+) | True | XLOC_000705 |
| TCONS_00001335 | other | downstream | 626603 | 58160151 ~ 58173589 (+) | True | XLOC_000837 |
| TCONS_00001394 | other | downstream | 1597744 | 59131292 ~ 59131406 (+) | True | XLOC_000888 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000219_00356816_00360009.mRNA | True | 1418 | mRNA | 0.37 | 7 | CI01000219 | 356484 ~ 360363 (+) |
