RNA id: TCONS_00001309


Basic Information

Item Value
RNA id TCONS_00001309
length 612
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_000820
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57724157 ~ 57763348 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAACATATCAGTGCTTTCAGTTGTTGTTGAAGCTCCAGTTACAGTTTCAGGACACAGAGGAGAGAAACTGGACATCAGATGCCCATATGAGTCTGGATATGAGTCAAACTCAAAGTATTTCTGTAAAGGCGAGTGTAACTTTGGGAATAAAAACATCATAGTTAAATCAGGATCTCCAGCAAAAGACAAGAGATTCTCTCTGACTGACGACAAGAAAAGCAGAGTTTTCACCATCACCATCACTGATCTGAGAACAGAGGATGAAGGACAATACTGGTGTGCTGTGAGGAGGAGTTTTACAGATATGGCTTTAACTGATCTCTATTCAGAGATTGTGCTGATGGTCAAACAGGATCAGGAAAACACTGAAGGTTCATCTGTCAGCTCTTTCTCCAACACGCCGTCATATTTCAGCTCAACAGAAGTGAATCTGCAGTCCAGCAGCAGCACAGATCAGCACAACTCTACAGGTCAATCACACTTACTTCAGACATATTCATCATGtgctgtatttatgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatgttctTCTTCAGTATGAGCAGCTCATTCACGTCTCtgctgtttatttctttctcGCTATCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000181754

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003262 lncRNA upstream 11921 57710298 ~ 57712236 (+) True XLOC_000819
TCONS_00002888 lncRNA upstream 158921 57541116 ~ 57565236 (+) False XLOC_000818
TCONS_00002889 lncRNA upstream 158921 57562842 ~ 57565236 (+) True XLOC_000818
TCONS_00003260 lncRNA upstream 288040 57408667 ~ 57436117 (+) True XLOC_000815
TCONS_00003261 lncRNA upstream 290741 57419348 ~ 57433416 (+) False XLOC_000816
TCONS_00003263 lncRNA downstream 169125 57926893 ~ 57931592 (+) False XLOC_000826
TCONS_00001318 lncRNA downstream 169721 57927489 ~ 57931592 (+) False XLOC_000826
TCONS_00003264 lncRNA downstream 169812 57927580 ~ 57931592 (+) False XLOC_000826
TCONS_00001319 lncRNA downstream 170206 57927974 ~ 57931592 (+) True XLOC_000826
TCONS_00001322 lncRNA downstream 226206 57983974 ~ 57984888 (+) True XLOC_000828
TCONS_00001308 mRNA upstream 190609 57521361 ~ 57533548 (+) True XLOC_000817
TCONS_00001306 mRNA upstream 342147 57371447 ~ 57382010 (+) False XLOC_000814
TCONS_00001307 mRNA upstream 342310 57371555 ~ 57381847 (+) True XLOC_000814
TCONS_00001305 mRNA upstream 359105 57348756 ~ 57365052 (+) True XLOC_000813
TCONS_00001303 mRNA upstream 359367 57347888 ~ 57364790 (+) False XLOC_000813
TCONS_00001315 mRNA downstream 3864 57761632 ~ 57763176 (+) True XLOC_000820
TCONS_00001316 mRNA downstream 16686 57774454 ~ 57779848 (+) True XLOC_000824
TCONS_00001317 mRNA downstream 29874 57787642 ~ 57793729 (+) True XLOC_000825
TCONS_00001320 mRNA downstream 209063 57966831 ~ 57980061 (+) True XLOC_000827
TCONS_00001321 mRNA downstream 224055 57981823 ~ 57991025 (+) False XLOC_000828
TCONS_00001304 other upstream 369124 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 2426906 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 2595578 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 3538001 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 3662947 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001335 other downstream 402383 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 1373524 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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