RNA id: TCONS_00001307


Basic Information

Item Value
RNA id TCONS_00001307
length 873
RNA type mRNA
GC content 0.61
exon number 4
gene id XLOC_000814
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57371447 ~ 57382010 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTTGACGGGGGTTTGGAGGATGCTTTTATTGCTTGTGTTGTCAGCTGTGGTCCTGTGTGGATGTGCACAGTATTCCAGTGATCAGTGCAGCTGGACGGGAAGcgGTCTGACGCACGAGTCTCACGCGCGGGATGTGGAGCAGGTGTATCTGCGCTGTGCTGAAGGCTCTCTGCAGTGGCTGTATCCCACCGGAGCGGTGATGGTGAACCTGCGGCCGAACCTGCCGTCCTCCGCTGATctacgtgtgtgtgtgaagcCGAGGCGGGACTCTCGCGGGGCCACTGTGCTGCTGGAGCGGGCGGGAGCGCTGCGGGTGCTGCTGAGCGAGGAGGAGCAGGCGGCGGGACGCGTGCGCTGCTTCAGTCTGCAGGAGGGGGCGCTGTTTCTGGAGGCGTCCGTACAGCGGGACATCAGCAGGAGGATCACTGCCTTCCAGTATCAGCTCAGCTACGCACACACTGCTGATCAACACACAGactcCTGCAGGCCGTGTGCAGATGAAGAGCTGCTGTTGTCCGTGTGCACCAGTGACTTTGTGGCGCGTGGCAGAATCAGTCGCGTAGAGgataatgatgaagatgaagatgaagatgggGTGTCAGTGGTGCTGTCTGTGAGCCGTGTGTATCGGCAGAAGAGCCGTATATTCGTGTCGGCCGGCGGGGGGCGCGGGCGTGACCGGTGGACGGGTCGAGTGCAGATTCTGCAGCGCTGTGATCCGCAGGCCGGACCCACAGAGTTCCTGTTCACCGGAGCGCTGCGGTTCGGAGACGCCTGGCTGGGATGCGCTCCGCTCTACACAGACTTTCTCAGAGTTTATCAAGCGGCTCGGGACGCAGGAACAAACCCCTGCACCATAAACActgactaa

Function

GO:

id name namespace
GO:0014850 response to muscle activity biological_process
GO:0090336 positive regulation of brown fat cell differentiation biological_process
GO:0050728 negative regulation of inflammatory response biological_process
GO:0009409 response to cold biological_process
GO:0097009 energy homeostasis biological_process
GO:0005615 extracellular space cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-223 Predicted to enable hormone activity. Predicted to be involved in energy homeostasis and positive regulation of brown fat cell differentiation. Predicted to act upstream of or within negative regulation of inflammatory response; response to cold; and response to muscle activity. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human METRNL (meteorin like, glial cell differentiation regulator).

Ensembl:

ensembl_id ENSDART00000181077

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003259 lncRNA upstream 131311 57238434 ~ 57240244 (+) True XLOC_000802
TCONS_00003258 lncRNA upstream 133949 57237308 ~ 57237606 (+) False XLOC_000802
TCONS_00003257 lncRNA upstream 156601 57214293 ~ 57214954 (+) True XLOC_000809
TCONS_00003256 lncRNA upstream 252496 57116265 ~ 57119059 (+) False XLOC_000801
TCONS_00003255 lncRNA upstream 326041 57044496 ~ 57045514 (+) True XLOC_000799
TCONS_00003260 lncRNA downstream 26820 57408667 ~ 57436117 (+) True XLOC_000815
TCONS_00003261 lncRNA downstream 37501 57419348 ~ 57433416 (+) False XLOC_000816
TCONS_00002887 lncRNA downstream 37523 57419370 ~ 57429115 (+) True XLOC_000816
TCONS_00002888 lncRNA downstream 159269 57541116 ~ 57565236 (+) False XLOC_000818
TCONS_00002889 lncRNA downstream 180995 57562842 ~ 57565236 (+) True XLOC_000818
TCONS_00001305 mRNA upstream 6503 57348756 ~ 57365052 (+) True XLOC_000813
TCONS_00001303 mRNA upstream 6765 57347888 ~ 57364790 (+) False XLOC_000813
TCONS_00001302 mRNA upstream 31363 57331829 ~ 57340192 (+) True XLOC_000812
TCONS_00001301 mRNA upstream 36750 57331813 ~ 57334805 (+) False XLOC_000812
TCONS_00001300 mRNA upstream 54184 57311901 ~ 57317371 (+) True XLOC_000811
TCONS_00001308 mRNA downstream 139514 57521361 ~ 57533548 (+) True XLOC_000817
TCONS_00001309 mRNA downstream 342310 57724157 ~ 57757768 (+) False XLOC_000820
TCONS_00001310 mRNA downstream 359730 57741577 ~ 57743393 (+) True XLOC_000821
TCONS_00001311 mRNA downstream 362553 57744400 ~ 57750367 (+) True XLOC_000823
TCONS_00001312 mRNA downstream 367399 57749246 ~ 57757768 (+) False XLOC_000820
TCONS_00001304 other upstream 16522 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 2074304 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 2242976 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 3185399 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 3310345 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001335 other downstream 778304 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 1749445 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000219_00214901_00222934.mRNA True 998 mRNA 0.58 4 CI01000219 214901 ~ 223176 (+)