XLOC_000799 (si:ch211-1f22.16)


Basic Information

Item Value
gene id XLOC_000799
gene name si:ch211-1f22.16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57040472 ~ 57045514 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001284
ATTTACATTACATCAGCATTTATATTAACACTTTGTCTTATAGTCCTGTTTACTGATAAACTACATTTTCATCATGATTATTTCTGTGTTTCAGGGGTTTCTGCTGCTGAATGGGGTGTGAATTACAGTCCTTCACATCTATGTGCACTGCAAGACTCAACAGTGACAATCGGTTGTATTTATAAGTATCCATCTACCAAATATCAGATCATGAAAGTGTTCTGGAACATAGACCAGGTAAAACATGATGATAGAGAGTTTGCAGATCTGTTTAATAACTCTGAATACAGTCAGAGGCTTCAGTATCTGGGAGACAAACAGCAGAACTGCACCGTCAGACTGAGTCATGTGACAAAGAAAGATGAACACCAGTATTATTTCAGATTCACTACTAATGGAACTGGAGGAAGGTGGATTGGTATTCCAGGAGTGCGTCTCTCTGTCACAGatcTTCAGCTGGTGTCTCCTGAGAGAGTGACAGAGGGAGATTCAGTCCGTCTGACATGTAACAGCAGCTGTAAACTGACTGACACACCAACATTCATCTGGTACAGAAACTCACACACATTGACTAATATTGGAGATGAACTCAACATCAGGTCAGTCAGTAGAACAGAAGCAGGACACTACAGCTGTGGTGTGCAGGGACAAACCTACATCTCTCCTGCTGTTTATCTCAATGTCACAtATGCTCCAGATACTCCTGTGATCTCCATCAGTGGATCTGCTGTAATAATgtctggagattcagtgactctgagctgcagcagcgACTCAAACCCTCCCGCAGAAATCAACTGGTTTAAAGGAAATAAAGCTCTGGATTCTGGAAGAATCTTCAACATCTCTGatgacagtggagaatacaagtgCAGAGTCAGAAATGACCATGGAGTGAAATACTCTGTTGCTGTGATTTTAAATGTGCAGTATCCTCCCAGGAATGTCTCAGTGTCTATCGTTGTTTCTGGTCAGCTTTGGTCTGATTCAGTGGGTCTGATGTGCATcagtgactcaaaccctcctgctctGAGCTTCAGCTGGTTTGAGGAGAATCAAAGCTCAGCTGTTGGATCTGGACAGAGTTTCAGTGCAGTACAGAGTGGACGCTTCTACTGTGAGGCTCACAATCCACATGGAGCTCAGAGATCAGACGCCGTCACTGTCACTGGTGAAGCTTTTATCATCACACTCCTAGAAATTTTTCTTTTCTCTGTCCAGACATATGCAGGTCTGGATCTCCAGTCCGCGACCTCTGACCTGTACAACACACTCACAGTAAGTGAAAGTCAAAGTCAGGCAATGGTCACTGATGATCAGATGATTGATGATCTCTCGCTGTCTTTCACACAGACCGTTCACCACAGACCTGCTGAAAACTCCTGCTCCACTCTTGATCCTCAGAGCTCTTCTGAACATCACAATCCACCAGTAAGAGACAATATCAGCCATAAACCCTCTCAGCAGCAGTTTGATTATTGGATGAGCCTCTTCAAAGAGTTTAATGTGGTTGAGCTTCAGTCTTTCTTCATCTTATTGTCTGTTCAGATCAACAGGAGGAGGCTGCAGTGA
>TCONS_00001285
TTTTCATCATGATTATTTCTGTGTTTCAGGGGTTTCTGCTGCTGAATGGGGTGTGAATTACAGTCCTTCACATCTATGTGCACTGCAAGACTCAACAGTGACAATCGGTTGTATTTATAAGTATCCATCTACCAAATATCAGATCATGAAAGTGTTCTGGAACATAGACCAGGTAAAACATGATGATAGAGAGTTTGCAGATCTGTTTAATAACTCTGAATACAGTCAGAGGCTTCAGTATCTGGGAGACAAACAGCAGAACTGCACCGTCAGACTGAGTCATGTGACAAAGAAAGATGAACACCAGTATTATTTCAGATTCACTACTAATGGAACTGGAGGAAGGTGGATTGGTATTCCAGGAGTGCGTCTCTCTGTCACAGatcTTCAGCTGGTGTCTCCTGAGAGAGTGACAGAGGGAGATTCAGTCCGTCTGACATGTAACAGCAGCTGTAAACTGACTGACACACCAACATTCATCTGGTACAGAAACTCACACACATTGACTAATATTGGAGATGAACTCAACATCAGGTCAGTCAGTAGAACAGAAGCAGGACACTACAGCTGTGGTGTGCAGGGACAAACCTACATCTCTCCTGCTGTTTATCTCAATGTCACAtATGCTCCAGATACTCCTGTGATCTCCATCAGTGGATCTGCTGTAATAATgtctggagattcagtgactctgagctgcagcagcgACTCAAACCCTCCCGCAGAAATCAACTGGTTTAAAGGAAATAAAGCTCTGGATTCTGGAAGAATCTTCAACATCTCTGatgacagtggagaatacaagtgCAGAGTCAGAAATGACCATGGAGTGAAATACTCTGTTGCTGTGATTTTAAATGTGCAGTATCCTCCCAGGAATGTCTCAGTGTCTATCGTTGTTTCTGGTCAGCTTTGGTCTGATTCAGTGGGTCTGATGTGCATcagtgactcaaaccctcctgctctGAGCTTCAGCTGGTTTGAGGAGAATCAAAGCTCAGCTGTTGGATCTGGACAGAGTTTCAGTGCAGTACAGAGTGGACGCTTCTACTGTGAGGCTCACAATCCACATGGAGCTCAGAGATCAGACGCCGTCACTGTCACTGTTCAGCAACATGCTGAGAGAAACATCATCATCACAGCGACATCTGGAGGATTAttcatcatcgtcgtcatcatcatgTTTGCAATGTGAGCTCAATAAAGCCTTCAGTGATCGTATAAAACTG
>TCONS_00003255
ACATATGCAGGTCTGGATCTCCAGTCCGCGACCTCTGACCTGTACAACACACTCACAGTAAGTGAAAGTCAAAGTCAGGCAATGGTCACTGATGATCAGATGATTGATGATCTCTCGCTGTCTTTCACACAGACCGTTCACCACAGACCTGCTGAAAACTCCTGCTCCACTCTTGATCCTCAGAGCTCTTCTGAACATCACAATCCACCAGTAAGAGACAATATCAGCCATAAACCCTCTCAGCAGCAGTTTGATTATTGGATGAGCCTCTTCAAAGAGTTTAATGTGGTTGAGCTTCAGTCTTTCTTCATCTTATTGTCTGTTCAGATCAACAGGAGGAGGCTGCAGTGAGACGCGGAGCCAGAAACAACCAATCCTGAGAAGTGTGGGAGGAGCCACAGATGATTGACAGGGTTTATTAGTGATGATTTAATTACTAAAGTGCCATGGCGCGACCACTActtactcttaaagggaatgagagatgagtctctgattggtttaatgcatgttactCCCTAAACACATCCATAACTAATTAAGAGAATAAGAACGACCCATTTGGACCATGTGCCGGTCTAAATCCTAAAAATTTAAATCCTTAAAAAGTTGATTCAGACACTTCTTCAGTGCTTTGTTCCATCTGCTTTAGACTTTTGAGTTTAGATTGCTAAAATGGAGCCCAATGTGTAAAACCCTCACTTCACCAGCAGAGGCCTccattttctaaatgttttatttttcataaaaaaactcTCCACTGATTTATGGTTTTCTGATGTACTGTGCTTAAAGTTATTTGAATGTGTTCTGCTTTATTTATAATGGATCATACTGTGAGCAATATTAATAATCTGAGTAGTCTGGTTTGTAAAGAGTGAAATGTTTCTCATTGTGATTTGTGTTTAatcttttttaccttttatttttagtcgtgtgtaaatgtgtatgtcTGTAATGACTAATGCTTTGCCAATGCAGTAAAGACTTTTCAAAGCCAGCTGAGTATCAATAATACA

Function

symbol description
si:ch211-1f22.16 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-59 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000096670

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001284 False 1572 mRNA 0.44 6 57040472 57044846
TCONS_00001285 False 1229 mRNA 0.44 5 57041549 57044166
TCONS_00003255 True 1019 lncRNA 0.39 1 57044496 57045514

Neighbor

gene id symbol gene type direction distance location
XLOC_000789 NA coding upstream 23692 56879466 ~ 57016780 (+)
XLOC_000798 si:ch211-1f22.13 coding upstream 32086 57004178 ~ 57008386 (+)
XLOC_000797 si:ch211-1f22.12 coding upstream 44329 56992262 ~ 56996143 (+)
XLOC_000796 si:ch211-1f22.11 coding upstream 58951 56972616 ~ 56981521 (+)
XLOC_000795 si:ch211-1f22.10 coding upstream 80471 56955349 ~ 56960001 (+)
XLOC_000800 si:ch211-1f22.14 coding downstream 5385 57050899 ~ 57059786 (+)
XLOC_000801 NA coding downstream 70751 57116265 ~ 57120505 (+)
XLOC_000802 si:dkey-27j5.10 coding downstream 86626 57132140 ~ 57240244 (+)
XLOC_000803 si:ch73-94k4.4 coding downstream 99558 57145072 ~ 57145503 (+)
XLOC_000804 si:ch73-94k4.5 coding downstream 106412 57151926 ~ 57160654 (+)
XLOC_000794 NA non-coding upstream 96083 56939347 ~ 56944389 (+)
XLOC_000783 NA non-coding upstream 140184 56819153 ~ 56900288 (+)
XLOC_000809 NA non-coding downstream 168779 57214293 ~ 57214954 (+)
XLOC_000815 NA non-coding downstream 363153 57408667 ~ 57436117 (+)
XLOC_000816 NA non-coding downstream 373834 57419348 ~ 57433416 (+)
XLOC_000818 NA non-coding downstream 495602 57541116 ~ 57565236 (+)

Expression


Co-expression Network