XLOC_000818


Basic Information

Item Value
gene id XLOC_000818
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57541116 ~ 57565236 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002888
ATTAGTTCTTTTCTGTCTAttgatttctttcttttatttccttGCAAAGACGTCCAAACCTGATCATGACGATGCAGTTTGCAATGATGATTTGACCGACCCTGTGTATGCAAATGTAGAGatcTCTGAAGCAGATCTCATTAGGAGTGCTGTTCACTGTTGAATGAAGCAACAGAGAAGCAGATAGTCCCACTTTTGCTTGCCCATGCAACATGTGGTTTAACTGTTGTTGAGTTTTAAGCTGTGAGTCTGTTGTGTCTTTGTAAAT
>TCONS_00002889
GCATGATTACCGTAACTGAACCGAAACGTCTACTCTAATTTTTAACTATATTTTCTTTTATCCCATGCTAAAGACAAATCCTTCAAGACCTCATCATGACAGTGGTGATGATATGACTGACCCTGTGTATGAAAATGTAGAGatcTCTGAAGCAGATCTCATTAGGAGTGCTGTTCACTGTTGAATGAAGCAACAGAGAAGCAGATAGTCCCACTTTTGCTTGCCCATGCAACATGTGGTTTAACTGTTGTTGAGTTTTAAGCTGTGAGTCTGTTGTGTCTTTGTAAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002888 False 268 lncRNA 0.39 2 57541116 57565236
TCONS_00002889 True 289 lncRNA 0.39 2 57562842 57565236

Neighbor

gene id symbol gene type direction distance location
XLOC_000817 tspan34 coding upstream 7568 57521361 ~ 57533548 (+)
XLOC_000815 NA coding upstream 104999 57408667 ~ 57436117 (+)
XLOC_000816 NA coding upstream 107700 57419348 ~ 57433416 (+)
XLOC_000814 metrnlb coding upstream 159106 57371447 ~ 57382010 (+)
XLOC_000813 b3gntl1 coding upstream 176064 57347888 ~ 57365052 (+)
XLOC_000819 NA coding downstream 145062 57710298 ~ 57712236 (+)
XLOC_000820 si:dkey-1c7.1 coding downstream 158921 57724157 ~ 57763348 (+)
XLOC_000821 LO018597.1 coding downstream 176341 57741577 ~ 57743393 (+)
XLOC_000822 NA coding downstream 176843 57742079 ~ 57742436 (+)
XLOC_000823 LO018597.2 coding downstream 179164 57744400 ~ 57750367 (+)
XLOC_000809 NA non-coding upstream 326162 57214293 ~ 57214954 (+)
XLOC_000801 NA non-coding upstream 420611 57116265 ~ 57120505 (+)
XLOC_000789 NA non-coding upstream 524336 56879466 ~ 57016780 (+)
XLOC_000826 NA non-coding downstream 361657 57926893 ~ 57931592 (+)
XLOC_000829 BX469930.2 non-coding downstream 438379 58003615 ~ 58017364 (+)
XLOC_000837 BX927298.1 non-coding downstream 594915 58160151 ~ 58173589 (+)

Expression


Co-expression Network