RNA id: TCONS_00003256


Basic Information

Item Value
RNA id TCONS_00003256
length 2795
lncRNA type sense_over
GC content 0.36
exon number 1
gene id XLOC_000801
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57116265 ~ 57120505 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCAGTCGCTGTTGATCGGCTGCTCTTCAACACGGTAAGACAAACACACGGGTATTTGCCTGATGATTAGTGTAGATGAAGCTCATATAACACATGATTTGTGACATGAGAAATATCTTGTGTTGATCTCAGTCATCAGTTGATTTACACACACTGATGTTGTGCATTAATAATCTGCAGATGTGTAAAGATCTTCCTAACACTAAGAGCTGTTTAGGGTGATGTACATTTACTGTTGATGAGTGTAGAAGTGATGATTAATGCTGGATTCTAGATAGATTTGATGCTGATGTGGCTCAGAAtggctcctgctcttcatctgatCTTTCTGCTCATCATTCACAGTGAGTCAATCTTACATTCACATCACTGCTTTATTCCTCTGCATTTACACACACCACACAATCAGACATTATCAGCCATTTTCTAATGATCTGCTGATCATCTTCTCTCTGATATAGGAAGTTAGGCTGTGCTGGAGAATCTGTTTTCTCAGTAGAGAGGCTTTAGTTAAAGTGTCATGAAACCCTCCAGTTTTAGCAGTTTTTCACACCACTGGTTTCAGCTGTGATGCACTGAAGTGCTGACacaagtcacactttattttaatgatctgtttgttgaatttaagttacattgcatctacatgccaactacttctcattagattatatgtggactgttagattggggttagtgtaagtctgggggggcgccagagcatgtcaggggaggcgcgggaaaaaatattatataataaaaatataattattaagtttaattattatatgtattttttattatatttaaacgttttaattaaacaaagcaaaaaaaataatacgtcaaaaataagaaaacctttttttacccagaaggccatagctgtgaattcgcttctgtttggcaagcccgccaatacaggtatatgcctgctaatacaatggatcggtttctgagacccccccgattcaaagccttcaagttcagggcttaaacccaaaagacgaggatatgatgatcagtatttcagtttaggatttacgtggacaggaccagctgatgatccacgacctttatgtgtggtttgtcaagatattttggctaatgatagcatgagacccgctaaacttcgactgttttgactgggatggacagttcttggatctgttctattcatattgaacaatcatcctagttttaaaaatgttatattaaaatacttgttattactctttaaataattgcactttcatgcaaatgatgataaaagtgagttaacagtctgacatctgtctgtgtctttatatatactgtgtatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgggaggaggggggcgccaatggataagttgtgtcaaaagggaggcccactgtcttagactttgaaaaaccctggtgtaagttaacatgtacctgcaaagttctttatagtcagttaaatgtctgttgagggAGCAGTATCAGtagatattaagcagtctactatTGCTtaactggaccatcaaaatataaTGTTACCCTGACACAAATATCCATCTGAAGATGGAAATTCACTGAATTTCTTTTCATGAACTTTACCacattaacactttattttgatgatccatttgacTATTAGTAGACTGTGTGCTTAAAGTCTGCtcatactgctccttcaacagacatttaactgactatatgaaACTCTGCCGGTACATTTCAGCtcaccccaaccctaacagtGGACTTATAATCTACgaaatgagaattagttggcatgtagatgcaatgcaacttaaattcaacaaactgaccatcaaaataaagtgtgtcctGTACTACTGACctacaaacacaaaaataatgctTCAGCTCACCACATAATTGTATGCaacataaacataattttggagaTGTAAAATCAACAATATTTAGAACAGAACAATTTACAGTAACAAATAATAATGTACGAACATGTAAACTACATTTGACTTCATTATggactaatgatgagttaaagCGTGTGGTAATATCATGAGTTTTCATTATTGGCtgatttaaactttaatattCTTTCTCATTCAGCAGGATTTATTTACCGTAATCTGGAGTgttcattaattaacaaacatactaacaagtttttcatttattattcatcACACTATTAGTTGATAATAAAGAAACATGCTATTAAATGcagtacattattatttattaactttttttgccCTGATATTTtccattattgttttttctcagctctctctctctctctctctctctctctctctgtttatttCTGTCCTCCATCAAGACTGAAGTCATTCACACTgagatcattattatttatattcacaagATCAGCTTAAAATATCATCTGTAATGAGTCCCTGTTTGCAATATTGAAAACCGAGTTCCTAGTGTCTTATAGTCCAGTTTACTGATAAAACTACATGTTAATCATGATTATTTCTGTGTTTAAGGGGTTACTGCTGCTGAATGGGGTATGAAATACAATGCTACAGAAATATGTGCACTACAGAACTCATCAGTGACAATCAGCTGCAATTTTACACACCCTGATGGATTGCAGATCAAGAGAGCCTTCTGGAACAAAAACGAGGTAAAACATGATGGAGAGCTTGCAGATCTGTCTGAGGACCCTGAATACAGTCAGAGGCTTCAGTATCTGGGAGATAAACAGCACAACCGCACTGTCAGACTGAGTCATGTGACAAAGAAAGATGAACATGACTATTA

Function

GO:

id name namespace
GO:0015807 L-amino acid transport biological_process
GO:0006811 ion transport biological_process
GO:0006865 amino acid transport biological_process
GO:0030425 dendrite cellular_component
GO:0097447 dendritic tree cellular_component
GO:0015075 ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003255 lncRNA upstream 70751 57044496 ~ 57045514 (+) True XLOC_000799
TCONS_00003251 lncRNA upstream 99485 56879466 ~ 57016780 (+) False XLOC_000789
TCONS_00003257 lncRNA downstream 95234 57214293 ~ 57214954 (+) True XLOC_000809
TCONS_00003258 lncRNA downstream 118249 57237308 ~ 57237606 (+) False XLOC_000802
TCONS_00003259 lncRNA downstream 119375 57238434 ~ 57240244 (+) True XLOC_000802
TCONS_00003260 lncRNA downstream 289608 57408667 ~ 57436117 (+) True XLOC_000815
TCONS_00003261 lncRNA downstream 300289 57419348 ~ 57433416 (+) False XLOC_000816
TCONS_00001286 mRNA upstream 56479 57050899 ~ 57059786 (+) True XLOC_000800
TCONS_00001284 mRNA upstream 71419 57040472 ~ 57044846 (+) False XLOC_000799
TCONS_00001285 mRNA upstream 72099 57041549 ~ 57044166 (+) False XLOC_000799
TCONS_00001282 mRNA upstream 107879 57004178 ~ 57008386 (+) True XLOC_000798
TCONS_00001281 mRNA upstream 120122 56992262 ~ 56996143 (+) True XLOC_000797
TCONS_00001288 mRNA downstream 13081 57132140 ~ 57143991 (+) False XLOC_000802
TCONS_00001289 mRNA downstream 23450 57142509 ~ 57236167 (+) False XLOC_000802
TCONS_00001290 mRNA downstream 26013 57145072 ~ 57145503 (+) True XLOC_000803
TCONS_00001291 mRNA downstream 32867 57151926 ~ 57160654 (+) True XLOC_000804
TCONS_00001292 mRNA downstream 57197 57176256 ~ 57180904 (+) True XLOC_000805
TCONS_00001233 other upstream 1819014 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 1987686 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 2930109 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 3055055 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 3728384 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001304 other downstream 228839 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 1041092 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 2012233 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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