Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001302 |
| length | 1581 |
| RNA type | mRNA |
| GC content | 0.61 |
| exon number | 8 |
| gene id | XLOC_000812 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 57331813 ~ 57340192 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006897 | endocytosis | biological_process |
| GO:0005768 | endosome | cellular_component |
| GO:0030125 | clathrin vesicle coat | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0005543 | phospholipid binding | molecular_function |
| GO:0030276 | clathrin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-121214-173 | Predicted to enable clathrin binding activity and phospholipid binding activity. Predicted to be involved in endocytosis. Predicted to be located in cytoplasm. Predicted to be part of clathrin vesicle coat. Predicted to be active in endosome and plasma membrane. Orthologous to human EPN3 (epsin 3). |
| ensembl_id | ENSDART00000062841 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003259 | lncRNA | upstream | 91585 | 57238434 ~ 57240244 (+) | True | XLOC_000802 |
| TCONS_00003258 | lncRNA | upstream | 94223 | 57237308 ~ 57237606 (+) | False | XLOC_000802 |
| TCONS_00003257 | lncRNA | upstream | 116875 | 57214293 ~ 57214954 (+) | True | XLOC_000809 |
| TCONS_00003256 | lncRNA | upstream | 212770 | 57116265 ~ 57119059 (+) | False | XLOC_000801 |
| TCONS_00003255 | lncRNA | upstream | 286315 | 57044496 ~ 57045514 (+) | True | XLOC_000799 |
| TCONS_00003260 | lncRNA | downstream | 68475 | 57408667 ~ 57436117 (+) | True | XLOC_000815 |
| TCONS_00003261 | lncRNA | downstream | 79156 | 57419348 ~ 57433416 (+) | False | XLOC_000816 |
| TCONS_00002887 | lncRNA | downstream | 79178 | 57419370 ~ 57429115 (+) | True | XLOC_000816 |
| TCONS_00002888 | lncRNA | downstream | 200924 | 57541116 ~ 57565236 (+) | False | XLOC_000818 |
| TCONS_00002889 | lncRNA | downstream | 222650 | 57562842 ~ 57565236 (+) | True | XLOC_000818 |
| TCONS_00001299 | mRNA | upstream | 14032 | 57269441 ~ 57317797 (+) | False | XLOC_000811 |
| TCONS_00001300 | mRNA | upstream | 14458 | 57311901 ~ 57317371 (+) | True | XLOC_000811 |
| TCONS_00001298 | mRNA | upstream | 93365 | 57235896 ~ 57238464 (+) | False | XLOC_000802 |
| TCONS_00001297 | mRNA | upstream | 107607 | 57218303 ~ 57224222 (+) | True | XLOC_000810 |
| TCONS_00001296 | mRNA | upstream | 108668 | 57218301 ~ 57223161 (+) | False | XLOC_000810 |
| TCONS_00001303 | mRNA | downstream | 7696 | 57347888 ~ 57364790 (+) | False | XLOC_000813 |
| TCONS_00001305 | mRNA | downstream | 8564 | 57348756 ~ 57365052 (+) | True | XLOC_000813 |
| TCONS_00001306 | mRNA | downstream | 31255 | 57371447 ~ 57382010 (+) | False | XLOC_000814 |
| TCONS_00001307 | mRNA | downstream | 31363 | 57371555 ~ 57381847 (+) | True | XLOC_000814 |
| TCONS_00001308 | mRNA | downstream | 181169 | 57521361 ~ 57533548 (+) | True | XLOC_000817 |
| TCONS_00001233 | other | upstream | 2034578 | 55293625 ~ 55297251 (+) | False | XLOC_000739 |
| TCONS_00001221 | other | upstream | 2203250 | 55128465 ~ 55128579 (+) | True | XLOC_000733 |
| TCONS_00001186 | other | upstream | 3145673 | 54186039 ~ 54186156 (+) | True | XLOC_000710 |
| TCONS_00001180 | other | upstream | 3270619 | 54053104 ~ 54061210 (+) | True | XLOC_000705 |
| TCONS_00001166 | other | upstream | 3943948 | 53387765 ~ 53387881 (+) | True | XLOC_000690 |
| TCONS_00001304 | other | downstream | 7706 | 57347898 ~ 57355033 (+) | False | XLOC_000813 |
| TCONS_00001335 | other | downstream | 819959 | 58160151 ~ 58173589 (+) | True | XLOC_000837 |
| TCONS_00001394 | other | downstream | 1791100 | 59131292 ~ 59131406 (+) | True | XLOC_000888 |
