RNA id: TCONS_00001316


Basic Information

Item Value
RNA id TCONS_00001316
length 1155
RNA type mRNA
GC content 0.40
exon number 6
gene id XLOC_000824
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57774454 ~ 57779848 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAAAACACGACCAGAAACACACAGAAGAGCTTGAGAAGAGCTGAATCTACTGATGACAGAAGATCAGTGAATAAGAGAGAAGAATGAAGATCATCTGGACTTTCACTCTGCTCATGATTCCTGgtgtgttgagCTCCATCAGTGTGACAGGATATTCAGGAGGTGGAGTCACCATCACATGCAAATATGCTGCACAATATAAAACAAAGGCAAAGTACTTTTGTAAGGGACAGTGGTTATCAACATGCTCTGACCAAATCAAGactgagattaaaaataaatgggTTCAGTCTGGAAGATTCTCTCTGTATGACAACACAAACGCAGCAGTTTTCAACGTGACCATCAGAAATCTGACAGAACAGGATTCTGGGACTTATTACTGTGGAGTTGATTTACAGATATCTGATATCTACACTAAAGTGAATCTGAAGGTCATCACAGtGAACAACACATTTGCAAAACCATTCTCAACCACAACTGAACCTAAAATGACTCTAAGTTCTGAACATTCAACATCCGATTTAACATTGAGTTCCCCATCAAGCTCAAATGGTTCCTCTCAGATCGTCGGTGTGTGGGTGTCTGTGTTTGTGATTTTACTCATCATTGGATTTGGGTTAAGCATAATTTTTTTCTGGAAAAGGCGTCAGACTcaagGCTCTAATTCAGCCTCTATAACTCCTGCAACAGGGAACAGTGAAGCGGTTCCTCAAATGCCGCACTTTTATGAAGAAATCAATAACACCAGACCTCAAACCGACTGCAGAACAGCACAATTACCCACAATCTCTTCTGCTGCCTGTACCACAGTCTACGCTACTCAACAATTACCCACAAACCCTTCTGCTTCCTGTAGCACTGTTTACGCTACTCCACATCAACCCAAAAACCCTTCTGCTTCCTGTAGCACTGTTTACGCTACTCCACATCAACCCACAAACCCCTCTGCTCCCTCTAATATTGTTCATACTGCAGATTAACAGAGCACAAGTTCACATaatcctttaaattttttttgcatgttgttttcAGTACACACAGCTATTTTAAAGCTGTAAGCTGTGCAGTATGTTTAAAACCATATGCATTTGACAAACTGAAATAGAATGCTGTTATATCATCAGATCGTTATTAAAATCCGAACAATAGTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000152507

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002890 lncRNA upstream 32018 57742079 ~ 57742436 (+) True XLOC_000822
TCONS_00003262 lncRNA upstream 62218 57710298 ~ 57712236 (+) True XLOC_000819
TCONS_00002888 lncRNA upstream 209218 57541116 ~ 57565236 (+) False XLOC_000818
TCONS_00002889 lncRNA upstream 209218 57562842 ~ 57565236 (+) True XLOC_000818
TCONS_00002887 lncRNA upstream 345339 57419370 ~ 57429115 (+) True XLOC_000816
TCONS_00003263 lncRNA downstream 147045 57926893 ~ 57931592 (+) False XLOC_000826
TCONS_00001318 lncRNA downstream 147641 57927489 ~ 57931592 (+) False XLOC_000826
TCONS_00003264 lncRNA downstream 147732 57927580 ~ 57931592 (+) False XLOC_000826
TCONS_00001319 lncRNA downstream 148126 57927974 ~ 57931592 (+) True XLOC_000826
TCONS_00001322 lncRNA downstream 204126 57983974 ~ 57984888 (+) True XLOC_000828
TCONS_00001314 mRNA upstream 11106 57757456 ~ 57763348 (+) False XLOC_000820
TCONS_00001315 mRNA upstream 11278 57761632 ~ 57763176 (+) True XLOC_000820
TCONS_00001309 mRNA upstream 16686 57724157 ~ 57757768 (+) False XLOC_000820
TCONS_00001317 mRNA downstream 7794 57787642 ~ 57793729 (+) True XLOC_000825
TCONS_00001320 mRNA downstream 186983 57966831 ~ 57980061 (+) True XLOC_000827
TCONS_00001321 mRNA downstream 201975 57981823 ~ 57991025 (+) False XLOC_000828
TCONS_00001324 mRNA downstream 259703 58039551 ~ 58049515 (+) True XLOC_000830
TCONS_00001325 mRNA downstream 286261 58066109 ~ 58076716 (+) False XLOC_000831
TCONS_00001304 other upstream 419421 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 2477203 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 2645875 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 3588298 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 3713244 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001335 other downstream 380303 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 1351444 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000548_00020341_00021636.mRNA True 1110 mRNA 0.37 3 CI01000548 19688 ~ 21636 (+)