RNA id: TCONS_00001320


Basic Information

Item Value
RNA id TCONS_00001320
length 6595
RNA type mRNA
GC content 0.48
exon number 8
gene id XLOC_000827
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57966831 ~ 57980061 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGAAAATGGAGGCCATGAACAGGTTGATGACTGATATGCTTGAGGAACTTGTGGAGGCAGAGCTCAAACAGTTCACCAGGCAGCTGTGGATGGGTGTGAAACCAGGCGTCGATCCCATTCCTCGTGGAAAGCTGGAGAATAAGGACCGTCAGGATGTGGTGGACTGTATGGTGCAGCATTACAGCAAGGATGCTGGGAAAATCGCTGTACAGGCTCTGCGCAGCATCAAGCAGAACGAGCGTGCAGATCGTCTCGAGTTGAATCTGCGGAAAGATGATGACTTCTTAGGAGAAGTCCTCAAAAAACACAAGGAAAGCATAAAGGCCAGTGTAGATGTGTTTGAAGGCAAGAAAGACAACAAAACAGACATCAACAAAGTGTACACCGAGCTGTTCATTACTGAAGGGGACATGACAGACGTCTGCAAAGAACACGAGGTTCAGAAGTTTGACCTAGCCTTGCAGATGCCAAGATCTGAGGACAAACCAATCGACTGTAATGAAATATTCAATTTGTTGAGGGGGAAGGACAAGGGAAACGTTGTTCTGACCAAAGGCATCGCCGGCATTGGAAAGACGTTCTCTGTGAACAAGTTCATCCTGGACTGGGCTGAAGGAAGAGCCAATCTGGATGTGGACTGTATGTTtctgcttccatttcgagagatTAACTTGATGATAAAAGATGGAGATGTTAGTCTTCACAAGTTTCTGTTGAAACTTTTCCCTGACATCACTGGCGTGGAAACGACACCGTTTTATGAAAAATGCAAACTGCTGTTCATCTTTGATGGGCTTGATGAGAGTCGCCTGGATTTGAACTTTAACCTTAGTTCAGTGGACGATGTCCATTCTTGCGCATCCATCGATGGTTTATTTACAAGCCTCATCAAAGGAAGGCTGCTTCGCTCATCTCTCATCTGGGTGACCTCACGACCCGCAGCGGCCAATCGGATCCCTTCCTACCATGTCGGGTTGTTCACTGAGGTGCGCGGATTCACTGACAAGCagaaggaggagtacttcagaaaaaAGGTCCCAGATGAAGATCAAGCTTCCAGGATAATCTCCCACATCCGGACGTCCCGCAGTCTCTACATCATGTGCCACATTCCCGTGTTCTGCTGGATCATCGCCACCGTTCTTCAGGatattctccagaagaacaaaggGGAGGACATTCCCTCCACCCTcactgagatgtacatccacttcctgctgatacAGATGAACATCAAGAACCAGAAGTATGATGAAAAACTGATACGGGATCGAACAGAGCTGTTGGGTTCAAACAGAGACATGATTTCTAAGTTGGCCAAACTGGCGTTCGAACAGCTGAAGAAAGAGAACGTCATGTTCTACCGGGAGGATCTGGCAGCATGCGGCATTAACGCAGATGAAGAGTTCACAGGACTgtgcactgagatcttcaagaAAGACTCTGTCCTGCATGAGCTGAAGGTGTATTACTTCATACACTTGAGTGTGCAGGAGTTCCTTGCTGCGCTGCATGTGTTTCTTTGCTACTTGGAGCTGGAAAAAGACATGAACTTGACAGATAGTGACCTGATGTTCTTCCTGGAGGATTCACGTCCAAAACAGAAGGAGCTGTTGCACGTTCTGCTGAGGAAGGCGATCGATAAAGCGGAGAAGAGCGATCGAGGGCATTTTGATCTCTTtctgcggttcctgctgggcaTTTCTCTCGAGTCCAATCAGAAGCTACTTATCGGCATCCTGAACGAAACAAAGAACAGTAAACAAAGCATCAGTAAAACCGTTCAGTACCTCAAGCAGTTGCAAAACAATGACAAATGCCCAGATAAATCTATCAACCACTTCTTCTGCATCCTGGAACTGCAGGACAGAACCCTGTACCAACAAATCATGAAATATCTGAGGTCAAAGACAAATCGGCCAAAAGTCATGTCCAGATCAAACTGCTCAGCGCTGGTGTATGTGCTTCTGATGTCACAGGAAGTGCTGGACAAATTCAACCCAAAGTTGTTCAACAAAACATATGCGGGATGCAGGATTCTCGTGCCAGCCGTGAGATGCAGCCGCAAGGCCCTGTTTTCAGACTgtggactgacagaaacatgctTTGAAACAGTGGCTTTGGCTCTACAGCTGGAGAACTGTCCTCTGGTTGAGCTGGACCTGAGCTACAACTACAGTCTGGAGGCGGCAGTGAACGTGATGTGTGCTGGACTCAAGAGCCCACACTGTCACCTGGAGAGCCTCAGGTTGGCCGGgtgtcatttagggcaggacagCTGTATGCAGGTGGTCTCTGCACTTCAGAGTATCTCACATCGTCTAAAAGAGCTCGACCTCAGCGGAAACGATCTGCAGGACTCAGGACTCCAAAAGCTCCTACAAGGGATGGAGAACACAGAGAAAAGACTTCAAGTCTTGAGGTTGAGCTGGTGTAACCTCACTGAAATGAGTTGTCAGCAGCTTTCCACGATTCTGAGCTCCAATTCGGTCTttagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgatggactgaagagtccaaactgtaaacTAAAGATACTGAGgttgtctggctgtatggtgacagaggaaggctgtggttttctatcttcagctctgagttcaaacccctcacacctgagagagctggatctgagctacaatcacccAGGACAATCAGGAGTCCAGCTGCTCCAACACACACTGGAGGATCCACACTGTAAACTGAAGACACTCAAAACTGATCCTATGGGTGACCACTTGATGAAACCCGGGATAGTGAAGTATGCATTCAATCTCACTCTGAATCCAAACACAGCTCACGTTCATCTGCTTCTCTCTGACGGAGACAGAAAGGTGACTCTAAAAGAGAAACAGCCGTATCCTGATGATCCGGAGAGATTTGAAGAGCATCATCAAGTGCTGTCCAGAGAGAGTCTGTccggacgctgttactgggagactGAATGGACGGGTCAGGAAGGCACGGTCGGTGTGGCGTATGAAAGCATCCCGAGGAAACCTGATGATCTTTTGTATGGCAGGTGCATGCTTGGAAACAACATCATTTCATGGAAGATTACGTGTGGAAGTCGCACACATGTTTCACACGCTGAAGAAGATATTACTGTGAAATCTCCATCCTCTGGCTCATGTAAGAGAGTGGGTGTGTATGTGGACACAACCGCTGGTGTTTTGTCCTTTTACCACGTCtttgacacactcacacacttgtaCACCTTCCTCATGCCTTTCACACAGCCTCTCTATGCAGCATTCAGAGTGGACGGCGAATCTGTGTCCATCTGTCCGATACCGTAAACAGAGGTTTTTAAATCCGAAGTAGAGGATGGTATTTTTTTGGGAATCGCACGGGTCACGGGATTTCAGTGGGATTGGAGTCATCTTTGCTTTTAATCATGGGATTGGGACAGTACAGGATAAAATAGTTTACGGGAGCAGATGGGGAGCAGGAATCAACCAATAGGAAAATGGCAACATAAAAAAATGCACTGCCATTTTGTAGTTTCCTTTTCATACGAATacaatcaacccaagctcattctggaaacgtagccccgcggacgtttctggagaacgcgatttacgtggccagaggtacgtaaaggccgcgtttgtttttttttgagcgaacgctgcggggcggtgtggtgccgctccgcccctcctgttcgcgctcgccggccgacggctcgcctccgagtggagggctttcccgatgcaatcagtttgtccgcttagctcacagcgttgcgtcggcggagcggaggccccggaggaggagccggagccggagccggccacggtggacgacgaccgggatcaaggccggggaacagcaggtttcggaaatcaggtaagacgaaaaacggaatccgaaaaataagggcgagaacgtggcgggatccgaaaacgcggtcgaaatcgaagacgagggcttttgcttttttttttccgatccggcggcttttcgcgtgaGAACGGCGCGAGCGCGAacgcgcgcgctcccgagaggcgcccgagacgcgaaaaagcacgcacagcggcctctcgcggatccgcgaaaacaataAACGCTccaatatgtacctcccgggacgtaaatcgcggtccgcagaaacgtccgcggggctacgtttccacaatgagcccgggttgaaaacAATGCAACGCAATTTAAAACTAACTGCACAATCGCTTGCTAACACCCGCGGAGAAATTGATGTGGTGAAAAAATTCTTTGCAGAGGTCATGACATTAACAGAACTAGTCAGGATGGAAATATTAATGAAGTTCATGAGAGTAAACTGCGATGATGATAGTACGCCCCGTATGCTGCTTGTAAAACATGCTTAATCTTAGTCAAGTACACCAGTTGATTCTGGGACGAGCAATCTGAAAAGGCACACTTGTTAAGTCTCGTCTGACCGACAAAATTGCTCACAACCATCACAGGTTCAGTGTTTTCACCctaagtaaattaaatttaatgaatCGAAttgaggtgacgcagtggcgcagtaggtagcactgtcgccttgccgcagaaaggtcgctggttcgagcctcggctgggtcagttggcgtttctgtgtggagtttgcatgttctccctgcatttgcatgggtttcctccgggtgctccagtttccccacaatccaaaaacatgcggtagaggtgaattgggtaggctaagggtgctttcacagttGGTTTTATTGCCTGGATCGTACCCAAGTTTGATTGTCCTCCCTTGCCACCTTCTGCCACCCAGGCTCATTCCgaaaatgtagccccgcggatgtttctagAGACTGCAATTTAAGTGGCCGGAGGTACGTGTGGccgaattttgttttttttcgagcgaacgctgtggGGCAGTGTAACGCCGGCTGTGATGGCTcgcctctgtgtggagggctttcccgccgcaaccagtttgtccgttTAGCTCGCAATGTTACCTCGGAGGGGCGGAGGCCTAGAGGAGGAGGAGCTGCCGGCCGCGGCAAGGACGACTGGGATCGAgttcggggaagagcggttccagaattcaggtaagatgaaaaacagaatccaaaaaataaaaacgaatGAGTTCAGGacagggcgagaatgcggcgaaACCCGAAAAGGCGGTCAAAATCGgatgagggcttttgcttttttttttttgcttttgtaaatCAACGTTtgggacagacggtcgctcgacagtggcctctggagGCTTTTCGCGtgagaacagcgtgggcgcgaaCGGAGCGTGCTCCCAAGAGGCGTTTGAGActtgaaaaagcgcacacagcggcctctcgcggattcgcgaaaacaaaaactgcacaaattcgtacctcccgggacatattttgtGGCCTCTAGAAACATCTGCTGGGCTATGTTTCCacgatgagcctgggttgatctTCTCGGTTGgcttgtgttcacactgtcttttttccttctgaaccctggCCCGCTTGCGTTATCGAGCTGCCATTCTGTTTATAGCttgctaggtgacggtcatgaaagcaaagcgccaaaatggaaagacgcCCACATATCACGGTcgtcctgcttttactgaatcttttggatTTGGTCATACAGAAAGCGACTTACGTCCacgttcagaacatcacacagtgtctgcaaaAGCTGTTTTTGAAGGAGACAAGTAGAAATTAttactgtgtttgccctggctcaatcatgcttgtcaccaaggtacgattcctgacacacacacatacagacacacacacacaaatgaacataATGAAAActatagtttgttgtacagtcggtggttcacttccgttatttggtacgataCGATACCAGAGTTTACATGAAccataccccagaccacctctttcaggcggactcgagTGCGGTTTGTGGGTgcacacccgagttcagaagacactagctaaacgtactgcACTATGACATCGAACGATcctgggtgcggaccaaaagtgctagtgtgaaagcacccgaaattgcccgtagtgtctgagtgtgtatggctgtttcccagtgatgggttgcagctggaaggacatccgctgcgtaaaacgtgctggataagttggtggttcattccgctatggcgaccccggattaaattGAAACTAGAAGAATGATTGTTTGCATGTGTGGTGGTGAGGAATGAGGACTAGAATATTTGCTGTTCATTTTTCATGTCAACTTTCTCTATAAAACCAGAATCATACTGACTATTTTCATATATTGAGGATGCATATAATGCATACAGCCACATGTTTTAATTTGAATCAAATAAGCAGATacaaacattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacatctTTTGTTTCtgcttatttgcttattttttatttttcaaagggTGTCAATATTTATTCGATGTTTAAATTGTGCATGCTGCATTTCTCTCTTTCATTATGTGCATATTGGATGAAAattgttaacatgttaattaaaaaacaaaacttttcaataAATGAGTAAAATGCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000151953

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003263 lncRNA upstream 35239 57926893 ~ 57931592 (+) False XLOC_000826
TCONS_00001318 lncRNA upstream 35239 57927489 ~ 57931592 (+) False XLOC_000826
TCONS_00003264 lncRNA upstream 35239 57927580 ~ 57931592 (+) False XLOC_000826
TCONS_00001319 lncRNA upstream 35239 57927974 ~ 57931592 (+) True XLOC_000826
TCONS_00002890 lncRNA upstream 224395 57742079 ~ 57742436 (+) True XLOC_000822
TCONS_00001322 lncRNA downstream 3913 57983974 ~ 57984888 (+) True XLOC_000828
TCONS_00001323 lncRNA downstream 23554 58003615 ~ 58017364 (+) True XLOC_000829
TCONS_00003265 lncRNA downstream 546330 58526391 ~ 58530485 (+) True XLOC_000862
TCONS_00003266 lncRNA downstream 597858 58577919 ~ 58585132 (+) True XLOC_000864
TCONS_00003267 lncRNA downstream 606292 58586353 ~ 58588475 (+) False XLOC_000865
TCONS_00001317 mRNA upstream 173102 57787642 ~ 57793729 (+) True XLOC_000825
TCONS_00001316 mRNA upstream 186983 57774454 ~ 57779848 (+) True XLOC_000824
TCONS_00001314 mRNA upstream 203483 57757456 ~ 57763348 (+) False XLOC_000820
TCONS_00001315 mRNA upstream 203655 57761632 ~ 57763176 (+) True XLOC_000820
TCONS_00001312 mRNA upstream 209063 57749246 ~ 57757768 (+) False XLOC_000820
TCONS_00001321 mRNA downstream 1762 57981823 ~ 57991025 (+) False XLOC_000828
TCONS_00001324 mRNA downstream 59490 58039551 ~ 58049515 (+) True XLOC_000830
TCONS_00001325 mRNA downstream 86048 58066109 ~ 58076716 (+) False XLOC_000831
TCONS_00001326 mRNA downstream 87754 58067815 ~ 58070078 (+) True XLOC_000831
TCONS_00001327 mRNA downstream 98992 58079053 ~ 58088949 (+) True XLOC_000832
TCONS_00001304 other upstream 611798 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 2669580 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 2838252 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 3780675 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 3905621 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001335 other downstream 180090 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 1151231 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000258_00096312_00110058.mRNA True 4279 mRNA 0.44 12 CI01000258 96312 ~ 111157 (+)