RNA id: TCONS_00003267


Basic Information

Item Value
RNA id TCONS_00003267
length 2123
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id XLOC_000865
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58586353 ~ 58595767 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCCACTGGGCGGAGTCTGATTTCGTGTGAGCGCAACCTCAGCATCTGTAAGACGTGATCATACAGAACTGCTTTCACCACTGTTACAGCATTAAACACAGCATGTCTTATACACCGATGCAATCTCCTTTGCATTATAACCTTTTGAATTAGAGGCTACtttgtattaatttgtatgatcttattcaaaaatgtattacgacttgctcatcctccaatgacaGAAAGGTCTATGGAATGGGGTTTGGATAggatgcctccttttaaaaatcataatttttttttaacaaattaaattgcATTAATTAGCGCAAATTAGCCACTTTACTGACAATTTGTAAAATAGTTGTTTCTTCGTGAGATCAAGCTGGTTGGAAACTGACTGAACTCTAATGGCTAGTTTATACTTCAGCATCAAGTGTGAGCGGATGGTCCGCCGGTGCCTTTCTGCAGTCACATACATGTCAGACATGCACCTTTGGTAAATATTCCAATGCATATTGCAAGagctgtgattggttggcttggtatcaGTGAGGAATATGGGCGGGGCTGATAGCAGAGCCCAGCCAGTGGACCGAGTGTTTAGAAGTGTCAAGTACTGTGGAGGAGCTCCATATAGATCACTTGGTTTTGGGGTTActttagagcacaggtgtcaaactcagttccaaaagggccgcagctctgcacagtttagttccaacctgatataaacacacctgatcaaactaattgagtccttcaggcttgtttgaaacctacaggtaagtgtgttggagcagggttggaactaaactgtgcagggcttcggccctccaggaaataagtttgacacccctgctttagagttAAAGTTGTTGAACGTCTGCCGGTTCCCGCCTTTTTCTTCCTTGAATGATTAAGTGTGAGCTACTTGAGGTACAGTATGTTAGCATTTCCGGTGTATAAAAAACACCCATTAAGAAACTCAAGAGAGGAACTGACAAACCAACACTGCCTGCTAGCATTTCGGATGTGTTTTTACCGTgcaacacaaacagaatgcagaagtataaatgcacaagcCAATCACTCGGTGTAAAAGTATAATCCAGGAGTCTTACAGGTATTTTGTGTCTCCATCTTGGTCACAGGATCTTTCAGCTGAGGACCAATCAGACGCATGCTGTTCTCCACCATGTCCAGAAATACACTCAGATTCTCGCCGTCAGCGACTTTTCCCTCCAGCAGCAGATCATCAGTGGAGTTGCACAAGTTCTGTCAAATTTATAATTGACGTTTGTTTGTAAGTGCACGTTCACAAACCGCTAAATGAATTTCTCaggcagtgtgtgtgtttcacctCCAGTAGCTCCTCTGCATTGAAATGTTTTTCTACTGGATCATTCAGAGACTCGCAGCTGTCCTTCAGCAGAGACATCATCTGATTCAACTACAAGAAAACACAGAAATCAAAGTCTATAGGAGAGTCAAAGAAGAGGCGGTgcagttttgcttttaaaaataaacatttttttatgttcaacacacacataataattcaaaggtttataaccacttaagggagagtaaatCGTGAGaaggttttgggtgaactatctctttaaacattattttactaaTATCATATTTacaaaactaataatattaagtGGGTTTTTACCTTCTCTGGTGTGTGGTCTTCATCAGGCTTAGATTTAAACTGATCACATTCGATTTCTGTGCACATCAAAATAATCAATCACACTATATTGCACTGATTAACCTTCATATTATTCTATTCACATTCTCATTTGCAGATGTAACCCGTGTTCACTGAAGGAGAGGGATtgctctgcatgaaagactcgtgaatggcagattaacctgctgctgctgaaGCTACaataaggtaaataaataaatataacagaaatgtggatgatgtgtggagatgattgacagggcccGAAAATAAGCAACAGAACAGTCCATTAATGAGGAAGTAGTTTGTTTCAAAGCTTGCATACTATTCTGCTACACACTCAAATGTATGTGCTTTTTTTCACAAACAAAGTACACACTTTTAGGACGTAGTATAAGTAGGTATAttaggacagtggttctcaaagtgggggtcg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003266 lncRNA upstream 1221 58577919 ~ 58585132 (+) True XLOC_000864
TCONS_00003265 lncRNA upstream 55868 58526391 ~ 58530485 (+) True XLOC_000862
TCONS_00001323 lncRNA upstream 568989 58003615 ~ 58017364 (+) True XLOC_000829
TCONS_00001322 lncRNA upstream 601465 57983974 ~ 57984888 (+) True XLOC_000828
TCONS_00003264 lncRNA upstream 654761 57927580 ~ 57931592 (+) False XLOC_000826
TCONS_00003269 lncRNA downstream 58210 58646685 ~ 58669075 (+) True XLOC_000871
TCONS_00002891 lncRNA downstream 189578 58778053 ~ 58782292 (+) True XLOC_000874
TCONS_00002892 lncRNA downstream 264695 58853170 ~ 58854124 (+) False XLOC_000876
TCONS_00003270 lncRNA downstream 264886 58853361 ~ 58854377 (+) False XLOC_000876
TCONS_00003271 lncRNA downstream 264889 58853364 ~ 58854377 (+) False XLOC_000876
TCONS_00001364 mRNA upstream 48997 58535306 ~ 58537356 (+) True XLOC_000863
TCONS_00001363 mRNA upstream 59354 58508790 ~ 58526999 (+) False XLOC_000862
TCONS_00001362 mRNA upstream 110635 58470337 ~ 58475718 (+) True XLOC_000861
TCONS_00001361 mRNA upstream 111023 58470287 ~ 58475330 (+) False XLOC_000861
TCONS_00001360 mRNA upstream 119546 58461990 ~ 58466807 (+) True XLOC_000849
TCONS_00001365 mRNA downstream 13205 58601680 ~ 58606490 (+) False XLOC_000866
TCONS_00001366 mRNA downstream 14031 58602506 ~ 58606221 (+) True XLOC_000866
TCONS_00001367 mRNA downstream 20503 58608978 ~ 58613487 (+) False XLOC_000867
TCONS_00001368 mRNA downstream 21410 58609885 ~ 58613331 (+) True XLOC_000867
TCONS_00001369 mRNA downstream 25497 58613972 ~ 58618868 (+) False XLOC_000868
TCONS_00001335 other upstream 412764 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001304 other upstream 1231320 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 3289102 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 3457774 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 4400197 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001394 other downstream 542817 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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