XLOC_000861 (si:ch73-236c18.7)


Basic Information

Item Value
gene id XLOC_000861
gene name si:ch73-236c18.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58470287 ~ 58475718 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001361
CAGAATCATCATCATTACCTCTAAACTCAAAATGAGACTTTATTATGGGCTTCtacataaatatgtttaaatttaaCCACTCAGAGTTTATTTAGGAAGTATCAGTGAGAGACGTCTGTGACCTTAAAATGAGTCTCAGCAAGAGAAAGGGCTCTAAAATGAGTTCTGCATCTCCTGGATCAACCTgcgtgtctatgaagagtgatcAATCCAAGAATTTTGTTTCTCCACAAATCAATGATGGAAcagtgacctctgacctcagcatcagTAGAAAGCAAATTTCAGAGTCTCCAGAACCCAGTGGTGTGTCTGTGAAGAGTAGCAGATCCATGGAGCAACGTCATACATTCAGTGATGGACCAACAACCTCAAAACGACCTCTTGCTGGCTGTAATCTCTCTGCTCAGGATTGTGAAATTGTGTCGTCAGTTcttcaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgatggactgaagagtccaaactgtcAGCTGGAGATACTGAGgttgtctggctgtatggtgacagaggaaggctgtggttttctatcTTCAGCTCTaagttcaaacccctcacacctgagagagctggatctgagctacaatcacccAGGACAATCAGGAGTCCAGCTGCTCCAACACACACTGGAGGATCCACACTACACACTGcagaaactcaattTGGATTATGAAGGACATTTCAGGATCATATCTGGACTGAGGAAATATGCAGTTAATATcacactggatccaaacacagcacacaatCAACTCATCCTGTCTGATGGAAACAAAACAGCAACACATGTGACAGATcctcagccgtatcctgatcatccagacagatttgatcaaCAGGAGCAGGT
>TCONS_00001362
TTCtacataaatatgtttaaatttaaCCACTCAGAGTTTATTTAGGAAGTATCAGTGAGAGACGTCTGTGACCTTAAAATGAGTCTCAGCAAGAGAAAGGGCTCTAAAATGAGTTCTGCATCTCCTGGATCAACCTgcgtgtctatgaagagtgatcAATCCAAGAATTTTGTTTCTCCACAAATCAATGATGGAAcagtgacctctgacctcagCAACAGAGAAATCCATGAACAGACCAAATTGGTGTCGTCAATTAAATTCAACTTACAAACTCACAAAAAACAGGAGAATCAAGAAACAGTTCTTAAGACACAAGCACAGGAAACTGGAGACCTGCAGAGAGTCAAAGACAAACTCAAAACCAgtttgaagaaaaaatatgagagattatttgagggaaacACACTCCAAGAGAACCAAACCCTCCTGAACCGGATCTACACCCAGCTGTACATCATAgagggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaacagCCAGAACAAAACACTCCCAACACACTCCaatctactgcaatgacatctttaaagagGAGAAAGAGCAAATCAAGACTGTTCttactaaaggcatcgctggaatcggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacacacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgaggagtgtaaagttgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagACGCTCAGAAAGTTTGTGATGTGACTGAgacttcatcagtggctgtgttgatgtcaAAGCTGATGAAAGGAgagctgcttccctctgctctcatctggatcacctccagaccagcagcagccaatcagatcccctccaaatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagtgagcagcatcaagccagcagaatcatctcacacatcagaagagcaagaagcctccacatcatgtgccacatacccgtcttctgctggatctcatccactgtgcttcagaagctcctggaagaagatctgagtgcagaaatccctcaaactctgactgaaatgtacatccacttcctgctgattcagatcaacatgaggaatcagaagtatgaagagagagatccagagaaactcctgcagtccaacagagaaGTGATtgtcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcgtAGACGTCTCTGACgcctcagtgtattctgggatttgcactgagatctttaaggaggaatctgtgattcagcagaggaaagtctacagcttcatccatctgaGTGTTCAGGAGTTCCTCGCTGCTTTCTATGTGTTTTACTACCATGTGAACACAACTATGGATGGACTGAGGAATTTTGCCTCGGTCGAAAACCTGCTTAAAGGTGCTGTAGATAAAACCATTGAGAGTGAGAATGGTtatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctactgacacacacagagaagagctCAAAGAGCATCAGGAGAagcacacagtacattaaagagaAGATCAGAGATGGACATGGACTCTCcactgaaagatccatcaatctgttcctctgtctgctggaagtgaaagatcagactctgtccagagagattcaggagtttgtgaaatcagacaaacagtcagagaagaaactctctcctgctcactgctcaacaatcgcCTACATGCTTCAGATGTCAGAGGAGGTGCTGGATGAGCTGGAGCTCCAGAAATACAACACATCAGATGAGGGCAGGAGAAGACTGATACCAGCCGTCAGCAACTGCACAAGAGCTCTTCTTGCTGGCTGTAATCTCTCTGCTCAGGATTGTGAAATTGTGTCGTCAGTTcttcaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgatggactgaagagtccaaactgtcAGCTGGAGATACTGAGgttgtctggctgtatggtgacagaggaaggctgtggttttctatcTTCAGCTCTaagttcaaacccctcacacctgagagagctggatctgagctacaatcacccAGGACAATCAGGAGTCCAGCTGCTCCAACACACACTGGAGGATCCACACTACACACTGcagaaactcaattTGGATTATGAAGGACATTTCAGGATCATATCTGGACTGAGGAAATATGCAGTTAATATcacactggatccaaacacagcacacaatCAACTCATCCTGTCTGATGGAAACAAAACAGCAACACATGTGACAGATcctcagccgtatcctgatcatccagacagatttgatcaaCAGGAGCAGGTTCTGTGTAGAGAGACTCTgactggacgctgttactgggaggtgAAATGGAGCGGCTCTGGTCATGTAGGTGTTGCTTATAAAGCGATCGAGAGAAAAAGTGGGAGTAATTGTCGATTTGGACGCAATGAACACTCTTGGAGTCTGTACTGCTGTGATGAGGTTTACTGTTCCTGGCACAATAACAAGAGTGATGATATTACTGCTCCTTCATCTAAGACTAATAGAGTAGGAGTGTATGTGGATGTGCCGGCCGGTTCTCTGTCCTTCTACAGTGTCTCtgacacactcacactcatacacacattcaACACCACATTCACTGAAGACATCTATGCTGGATTTGTGGTTTATCCTGCATCTTCAGTGTCTCTTTTGGATATTTAACAA

Function

symbol description
si:ch73-236c18.7 Predicted to be involved in intracellular signal transduction.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-3 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDARG00000098706

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001361 False 916 mRNA 0.44 6 58470287 58475330
TCONS_00001362 True 3006 mRNA 0.45 6 58470337 58475718

Neighbor

gene id symbol gene type direction distance location
XLOC_000849 si:dkey-222h21.10 coding upstream 3353 58312187 ~ 58466934 (+)
XLOC_000860 si:ch73-236c18.5 coding upstream 10420 58456494 ~ 58459867 (+)
XLOC_000859 zgc:194906 coding upstream 19016 58442694 ~ 58451271 (+)
XLOC_000858 si:ch73-236c18.3 coding upstream 36035 58424507 ~ 58434252 (+)
XLOC_000857 si:ch73-59p9.2 coding upstream 54333 58400409 ~ 58415954 (+)
XLOC_000862 si:ch73-236c18.9 coding downstream 33072 58508790 ~ 58530485 (+)
XLOC_000863 zgc:172091 coding downstream 59588 58535306 ~ 58537356 (+)
XLOC_000864 NA coding downstream 102201 58577919 ~ 58585132 (+)
XLOC_000865 NA coding downstream 110635 58586353 ~ 58595767 (+)
XLOC_000866 si:ch73-221f6.1 coding downstream 125962 58601680 ~ 58606490 (+)
XLOC_000837 BX927298.1 non-coding upstream 296698 58160151 ~ 58173589 (+)
XLOC_000829 BX469930.2 non-coding upstream 452923 58003615 ~ 58017364 (+)
XLOC_000826 NA non-coding upstream 538695 57926893 ~ 57931592 (+)
XLOC_000822 NA non-coding upstream 727851 57742079 ~ 57742436 (+)
XLOC_000819 NA non-coding upstream 758051 57710298 ~ 57712236 (+)
XLOC_000871 NA non-coding downstream 170967 58646685 ~ 58669075 (+)
XLOC_000874 NA non-coding downstream 302335 58778053 ~ 58782292 (+)
XLOC_000876 NA non-coding downstream 377452 58853170 ~ 58854377 (+)

Expression


Co-expression Network