XLOC_000860 (si:ch73-236c18.5)


Basic Information

Item Value
gene id XLOC_000860
gene name si:ch73-236c18.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58456494 ~ 58459867 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001359
tccagcaaacacaagATTGAAAACATGCAGAGAGTCAAAGACAAGCACAAAGCCATCATGAGGAACAAGTATGATAGATTATATGAAGGAATCAAACTACAAGAGACCGAAACCCTCCTAAACCGTATCTACACCCAGCTGTACATCATAgagggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaacagCCAGAACAAAACACTCCCAACACACTCCaatctactgcaatgacatctttaaagagGAGAAAGAGCAAATCAAGACTGTTCttactaaaggcatcgctggaatcggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacacacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgaggagtgtaaagttgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagACGCTCAGAAAGTTTGTGATGTGACTGAgacttcatcagtggctgtgttgatgtcaAAGCTGATGAAAGGAgagctgcttccctctgctctcatctggatcacctccagaccagcagcagccaatcagatcccctccaaatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagtgagcagcatcaagccagcagaatcatctcacacatcagaagagcaagaagcctccacatcatgtgccacatacccgtcttctgctggatctcatccactgtgcttcagaagctcctggaagaagatctgagtgcagaaatccctcaaactctgactgaaatgtacatccacttcctgctgattcagatcaacatgaggaatcagaagtatgaagagagagatccagagaaactcctgcagtccaacagagaaGTGATtgtcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggtgTAGATGCAGCTCACACCTCAATATATTCTGGGATTTGCActgagatctttaaggaggaatctgtgattcagcagaggaaagtctacagcttcatccatctgagcgttcaggagtttctggctgcaTTTTTTGCCTTTTACTATTATTTAAGTACAATTAGAGAAGGACTGAAAAACTTACTTTCAGTACAAAGTTTGCTTGAAGGTGCAGTTGATAAAGCCATTGAGAGTGAGAgtggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctactgacacacacagagaagagctcagagagcatcaggagaagcacacagtacattaaagagaAGATCAGAGATGGACATGGACTCTCcactgaaagatccatcaatctgttcctctgtctgctggaagtgaaagatcagactctgtccagagagattcaggagtttgtgaaatcagacaaacagtcagagaaaaaactctctcctgctcactgctcaacaatcgcCTACATGCTTCAGATGTCAGAGGAGGTGCTGGATGAGCTGGAGCTCCAGAAATACAACACATCAGATGAGGGCAGGAGAAGACTGATACCAGCCGTCAGCAACTGCACAAGAGCTCTTCTTACTGGCTGTAATCTCTCTGCTCAGGATTGTGAAATTGTGTCGTCAGTTCTTCAgtcctcaaactgtgtcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgatggactgaagagtccaaactgtcGACTGAAGATACTGAGGTTGTCTGgttgtatggtgacagaggaaggctgtggttttctatcttcagctctgagatcaaacccctcacaccttagagagctggatctgagctacaatcacccAGGACAATCAGGAGTCCAGCTGCTCCAACACACACTGGAGGATCCACACTACACACTGAAGCAACTAAATTTGGATCATGGGGGCCTATTTAGAATGACACCAGGAATGAGAAAATATGCCTGTTTTCTCACACTGGATCCAAACAGCGCTCACACTCGTCtgattctgtctgaggagaacaggaCAGTGGCTCACGTGGAGGAtcatcagccgtatcctgatcatccagacagatttgagaACTATGAGCAGGTTCTGTGTAGAGAGACTCTgactggacgctgttactgggaggctGAATGGAGGGGCAAGGGGGCTGGAATTGCAGTGTCATATAAAGGAATCAGCAGGAAAGGAGGGAATGACTGTTGGTTTGGATATAGTGACAAATCCTGgagtctgtactgcacttcaagtGGATTCACTGTTTGGCACAATAATGTGAGCTCTAACATATTGATCTCTGTGCCCCAGTCTAATAGAGTAGGAGTGTATGTGGACGTGCCGTCCGGCTCTCTGTCCTTCTACAGtgtctctgacacacacacactcacacacttacacacattcaACACCACATTCACTGAAGACCTCTATGCTGGATTCAGAGTTTATGAATCCTCCGTGTCTCAGTGCAACATTCAGCAATCATAATTTG

Function

symbol description
si:ch73-236c18.5 Predicted to be involved in intracellular signal transduction. Is expressed in female organism.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121213-7 Predicted to be involved in intracellular signal transduction. Is expressed in female organism.

Ensembl:

ensembl_id ENSDARG00000103330

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001359 True 2710 mRNA 0.46 5 58456494 58459867

Neighbor

gene id symbol gene type direction distance location
XLOC_000859 zgc:194906 coding upstream 5223 58442694 ~ 58451271 (+)
XLOC_000858 si:ch73-236c18.3 coding upstream 22242 58424507 ~ 58434252 (+)
XLOC_000857 si:ch73-59p9.2 coding upstream 40540 58400409 ~ 58415954 (+)
XLOC_000856 si:ch73-236c18.2 coding upstream 59214 58393630 ~ 58397280 (+)
XLOC_000855 CU914631.1 coding upstream 70366 58375871 ~ 58386128 (+)
XLOC_000861 si:ch73-236c18.7 coding downstream 10420 58470287 ~ 58475718 (+)
XLOC_000862 si:ch73-236c18.9 coding downstream 48923 58508790 ~ 58530485 (+)
XLOC_000863 zgc:172091 coding downstream 75439 58535306 ~ 58537356 (+)
XLOC_000864 NA coding downstream 118052 58577919 ~ 58585132 (+)
XLOC_000865 NA coding downstream 126486 58586353 ~ 58595767 (+)
XLOC_000837 BX927298.1 non-coding upstream 282905 58160151 ~ 58173589 (+)
XLOC_000829 BX469930.2 non-coding upstream 439130 58003615 ~ 58017364 (+)
XLOC_000826 NA non-coding upstream 524902 57926893 ~ 57931592 (+)
XLOC_000822 NA non-coding upstream 714058 57742079 ~ 57742436 (+)
XLOC_000819 NA non-coding upstream 744258 57710298 ~ 57712236 (+)
XLOC_000871 NA non-coding downstream 186818 58646685 ~ 58669075 (+)
XLOC_000874 NA non-coding downstream 318186 58778053 ~ 58782292 (+)
XLOC_000876 NA non-coding downstream 393303 58853170 ~ 58854377 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G137305 NA non-coding CI01000026 null 16176144 ~ 16176463 (+)
bowfin (Amia calva) G124434 NA non-coding CM030136.1 CM030136.1 21941177 ~ 21953671 (-)