XLOC_000876


Basic Information

Item Value
gene id XLOC_000876
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58853170 ~ 58854377 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002892
tctccaggagaacaaatattagaggaaacactgtcaacaactcctgaatctgagaaacatcatttgggaaatatttaaaaaagaaactaaaattcaaaagggggtgaatatttctgacctcaactgtatattccGCTATAAAGCAAACTCTGTTAATATCTGCTGAAAATGAGAAAAACAAATCAGTAAAGCAGCTCAATACTTGCCCTTTTATTGATAATATTCATCATTACATGTAGGATATTCACGCTTCTGTCCGCATTCAGTGCCAAACGTCATCAGAAAAATACAGAACATAGAGAAAACAGACTGAAGTCAGAGAAACACACAGCTCCAACCCCCTGATGATGACCGGCTTCCAGTAAAGACATGAAGATTCAGCTGAAGCTCAGAGACTATCAGTCAACACACATATAAAGCACGTCTGCTCTCTCTATAGAGGCACTTTAGCAGACTGAGTCTGATTATACGAATATTAGAGAGTATTATAGTATAAACACACATCAGTGTTAAACACACACTGCATGTGCAAATATTCCTGTACTGATGAGGAAACACCATCAGTCAGTTCACTAGTGTTCATGTGAGTGTTAATGCAGTGATCGGAGTGTATTTCTGTAAACACTGCTGTTAGATTCCCTGAAGACAGCAGTtctgctcaacacacacacacactcacacatgctgcTTTACATGCGCAGAAATGTGTGTTAATGCTGCTGTAAATGCCCTGAAGTGTGTGGGGGAACCATCAGGATTTAAACTGAAGACATTATTAGAGCTGAGAAATgacaccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtcttttTTGACTTGTGTGCATTTgtgagtag
>TCONS_00003270
CAGCTCAATACTTGCCCTTTTATTGATAATATTCATCATTACATGTAGGATATTCACGCTTCTGTCCGCATTCAGTGCCAAACGTCATCAGAAAAATACAGAACATAGAGAAAACAGACTGAAGTCAGAGAAACACACAGCTCCAACCCCCTGATGATGACCGGCTTCCAGTAAAGACATGAAGATTCAGCTGAAGCTCAGAGACTATCAGTCAACACACATATAAAGCACGTCTGCTCTCTCTATAGAGGCACTTTAGCAGACTGAGTCTGATTATACGAATATTAGAGAGTATTATAGTATAAACACACATCAGTGTTAAACACACACTGCATGTGCAAATATTCCTGTACTGATGAGGAAACACCATCAGTCAGTTCACTAGTGTTCATGTGAGTGTTAATGCAGTGATCGGAGTGTATTTCTGTAAACACTGCTGTTAGATTCCCTGAAGACAGCAGTtctgctcaacacacacacacactcacacatgctgcTTTACATGCGCAGAAATGTGTGTTAATGCTGCTGTAAATGCCCTGAAGTGTGTGGGGGAACCATCAGGATTTAAACTGAAGACATTATTAGAGCTGAGAAATgacaccagtgtgtgtgtgtgtgtgtgtgtgtgttgagattTTTTAATGATACAATgcgtgttagtgtgtgtgtgttgtctttttttgacttgtgtgcatttgtgagtagtgttagtgtgtgtgtgttgtcttttTTGACTTGTGTGCATTTgtgagtagtgtgtgtgtgtgtgtgtgtgtgttgtctcctctggtgtagagtgtgtgtgtgtgtgtgtgtttttatctcTGACATGTGTATGTTGTTGTCTCTGGTGTGTGTCGTTGATCCTCTggcgtgtgtatatgtatgtgtgtgtgtctgtgtttgtatgtttatgaGTAGTGTGAGTATTGTGTGTGTTGTCATTTCTTCTGGTGTAGTGTGG
>TCONS_00003271
CTCAATACTTGCCCTTTTATTGATAATATTCATCATTACATGTAGGATATTCACGCTTCTGTCCGCATTCAGTGCCAAACGTCATCAGAAAAATACAGAACATAGAGAAAACAGACTGAAGTCAGAGAAACACACAGCTCCAACCCCCTGATGATGACCGGCTTCCAGTAAAGACATGAAGATTCAGCTGAAGCTCAGAGACTATCAGTCAACACACATATAAAGCACGTCTGCTCTCTCTATAGAGGCACTTTAGCAGACTGAGTCTGATTATACGAATATTAGAGAGTATTATAGTATAAACACACATCAGTGTTAAACACACACTGCATGTGCAAATATTCCTGTACTGATGAGGAAACACCATCAGTCAGTTCACTAGTGTTCATGTGAGTGTTAATGCAGTGATCGGAGTGTATTTCTGTAAACACTGCTGTTAGATTCCCTGAAGACAGCAGTtctgctcaacacacacacacactcacacatgctgcTTTACATGCGCAGAAATGTGTGTTAATGCTGCTGTAAATGCCCTGAAGTGTGTGGGGGAACCATCAGGATTTAAACTGAAGACATTATTAGAGCTGAGAAATgacaccagtgtgtgtgtgtgtgtgtgtgtgtgttgagattTTTTAATGATACAATgcgtgttatagtgtgtgtgtgttgtcttttTTGACTTGTGTGCATTTgtgagtagtgtgtgtgtgtgtgtgtgtgtgttgtctcctctggtgtagagtgtgtgtgtgtgtgtgtgtttttatctcTGACATGTGTATGTTGTTGTCTCTGGTGTGTGTCGTTGATCCTCTggcgtgtgtatatgtatgtgtgtgtgtctgtgtttgtatgtttatgaGTAGTGTGAGTATTGTGTGTGTTGTCATTTCTTCTGGTGTAGTGTGG
>TCONS_00003272
TTCACGCTTCTGTCCGCATTCAGTGCCAAACGTCATCAGAAAAATACAGAACATAGAGAAAACAGACTGAAGTCAGAGAAACACACAGCTCCAACCCCCTGATGATGACCGGCTTCCAGTAAAGACATGAAGATTCAGCTGAAGCTCAGAGACTATCAGTCAACACACATATAAAGCACGTCTGCTCTCTCTATAGAGGCACTTTAGCAGACTGAGTCTGATTATACGAATATTAGAGAGTATTATAGTATAAACACACATCAGTGTTAAACACACACTGCATGTGCAAATATTCCTGTACTGATGAGGAAACACCATCAGTCAGTTCACTAGTGTTCATGTGAGTGTTAATGCAGTGATCGGAGTGTATTTCTGTAAACACTGCTGTTAGATTCCCTGAAGACAGCAGTtctgctcaacacacacacacactcacacatgctgcTTTACATGCGCAGAAATGTGTGTTAATGCTGCTGTAAATGCCCTGAAGTGTGTGGGGGAACCATCAGGATTTAAACTGAAGACATTATTAGAGCTGAGAAATgacaccagtgtgtgtgtgtgtgtgtgtgtgtgttgagattTTTTAATGATACAATgcgtgttagtgtgtgtgtgttgtctttttttgacttgtgtgcatttgtgagtagtgttagtgtgtgtgtgtgtgtgtgtgtgttgtctcctctggtgtagagtgtgtgtgtgtgtgtgtgtttttatctcTGACATGTGTATGTTGTTGTCTCTGGTGTGTGTCGTTGATCCTCTggcgtgtgtatatgtatgtgtgtgtgtctgtgtttgtatgtttatgaGTAGTGTGAGTATTGTGTGTGTTGTCATTTCTTCTGGTGTAGTGTGG
>TCONS_00003273
CACGCTTCTGTCCGCATTCAGTGCCAAACGTCATCAGAAAAATACAGAACATAGAGAAAACAGACTGAAGTCAGAGAAACACACAGCTCCAACCCCCTGATGATGACCGGCTTCCAGTAAAGACATGAAGATTCAGCTGAAGCTCAGAGACTATCAGTCAACACACATATAAAGCACGTCTGCTCTCTCTATAGAGGCACTTTAGCAGACTGAGTCTGATTATACGAATATTAGAGAGTATTATAGTATAAACACACATCAGTGTTAAACACACACTGCATGTGCAAATATTCCTGTACTGATGAGGAAACACCATCAGTCAGTTCACTAGTGTTCATGTGAGTGTTAATGCAGTGATCGGAGTGTATTTCTGTAAACACTGCTGTTAGATTCCCTGAAGACAGCAGTtctgctcaacacacacacacactcacacatgctgcTTTACATGCGCAGAAATGTGTGTTAATGCTGCTGTAAATGCCCTGAAGTGTGTGGGGGAACCATCAGGATTTAAACTGAAGACATTATTAGAGCTGAGAAATgacaccagtgtgtgtgtgtgtgtgtgtgtgtgttgagattTTTTAATGATACAATgcgtgttagtgtgtgtgtgttgtctttttttgacttgtgtgcatttgtgagtagtgtgttagtgtgtgtgtgtgtgtgtgtgtgttgtctcctctggtgtagagtgtgtgtgtgtgtgtgtgtttttatctcTGACATGTGTATGTTGTTGTCTCTGGTGTGTGTCGTTGATCCTCTggcgtgtgtatatgtatgtgtgtgtgtctgtgtttgtatgtttatgaGTAGTGTGAGTATTGTGTGTGTTGTCATTTCTTCTGGTGTAGTGTGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002892 False 870 lncRNA 0.39 3 58853170 58854124
TCONS_00003270 False 967 lncRNA 0.41 2 58853361 58854377
TCONS_00003271 False 915 lncRNA 0.41 2 58853364 58854377
TCONS_00003272 False 871 lncRNA 0.42 2 58853413 58854377
TCONS_00003273 True 871 lncRNA 0.42 2 58853415 58854377

Neighbor

gene id symbol gene type direction distance location
XLOC_000875 tmed1b coding upstream 2484 58840889 ~ 58850686 (+)
XLOC_000874 NA coding upstream 70878 58778053 ~ 58782292 (+)
XLOC_000873 CABZ01084617.1 coding upstream 109133 58735326 ~ 58744037 (+)
XLOC_000872 LO017784.1 coding upstream 171625 58677434 ~ 58681545 (+)
XLOC_000871 NA coding upstream 184095 58646685 ~ 58669075 (+)
XLOC_000877 trip10b coding downstream 67650 58922027 ~ 58935898 (+)
XLOC_000878 NA coding downstream 101689 58956066 ~ 58959457 (+)
XLOC_000879 NA coding downstream 120640 58975017 ~ 58976687 (+)
XLOC_000880 eri2 coding downstream 122885 58977262 ~ 58979451 (+)
XLOC_000881 thumpd1 coding downstream 127608 58981985 ~ 58985885 (+)
XLOC_000865 NA non-coding upstream 257403 58586353 ~ 58595767 (+)
XLOC_000864 NA non-coding upstream 268038 58577919 ~ 58585132 (+)
XLOC_000837 BX927298.1 non-coding upstream 679581 58160151 ~ 58173589 (+)
XLOC_000888 FP015850.1 non-coding downstream 276915 59131292 ~ 59131406 (+)
XLOC_000889 NA non-coding downstream 283506 59137883 ~ 59138594 (+)
XLOC_000893 NA non-coding downstream 307588 59161965 ~ 59162831 (+)

Expression


Co-expression Network