XLOC_000871


Basic Information

Item Value
gene id XLOC_000871
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58646685 ~ 58669075 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003269
CTGGATATGATTTCCCAACAACCGTCTCCCAGCTGGTGTTGAAGAGGGCGGAGCCTGTGCTCAGAATGACACTCCCACTAGGCGGAGTCTGATTGCGCGTGACTGCAACCTCAGCATCTGCTCTTTCAGCTGAGGACAAATCAGACGCATGCTGTTCTCCACCGTATCCAGAAGAACACTCAGAGTCTCGCCATCACCGACGCTTCCCGCCGACAGCAGATCATCAGTGGAGATGAAGGTCTGCTGTAAATGTCCTGTGTTTGGTCACGGTGCACTGGTGATTTCTGATCATGTCGGGGGTTTTGGATACTCATTTCACACACACCACGGGACGCAGTTGACGCTTGCGGTGatgatgt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003269 True 359 lncRNA 0.53 3 58646685 58669075

Neighbor

gene id symbol gene type direction distance location
XLOC_000870 si:ch73-221f6.4 coding upstream 14621 58628165 ~ 58632064 (+)
XLOC_000869 zgc:174890 coding upstream 24187 58620953 ~ 58622498 (+)
XLOC_000868 si:ch73-221f6.3 coding upstream 27817 58613972 ~ 58618868 (+)
XLOC_000867 si:ch73-236c18.9 coding upstream 33198 58608978 ~ 58613487 (+)
XLOC_000866 si:ch73-221f6.1 coding upstream 40195 58601680 ~ 58606490 (+)
XLOC_000872 LO017784.1 coding downstream 8359 58677434 ~ 58681545 (+)
XLOC_000873 CABZ01084617.1 coding downstream 66251 58735326 ~ 58744037 (+)
XLOC_000874 NA coding downstream 108978 58778053 ~ 58782292 (+)
XLOC_000875 tmed1b coding downstream 171814 58840889 ~ 58850686 (+)
XLOC_000876 NA coding downstream 184095 58853170 ~ 58854377 (+)
XLOC_000865 NA non-coding upstream 50918 58586353 ~ 58595767 (+)
XLOC_000864 NA non-coding upstream 61553 58577919 ~ 58585132 (+)
XLOC_000837 BX927298.1 non-coding upstream 473096 58160151 ~ 58173589 (+)
XLOC_000829 BX469930.2 non-coding upstream 629321 58003615 ~ 58017364 (+)
XLOC_000826 NA non-coding upstream 715093 57926893 ~ 57931592 (+)
XLOC_000878 NA non-coding downstream 286991 58956066 ~ 58959457 (+)
XLOC_000879 NA non-coding downstream 305942 58975017 ~ 58976687 (+)
XLOC_000888 FP015850.1 non-coding downstream 462217 59131292 ~ 59131406 (+)

Expression


Co-expression Network