XLOC_000874


Basic Information

Item Value
gene id XLOC_000874
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58778053 ~ 58782292 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002891
GGTGGGTAGGAGAGGTATTGACGTATTTAAAGAGCGGTGGGGGGGTGtgcgcgacgtatctgaagagcagtgggggtGTGTGTGCGCGATGTATCTGAAGAGCAGTGGGGACGTGTGCGCGCGacatatctgaagagcggtgggggcgtgtgcacGTGATGTATCTGAAaagcggtgggggcgtgtgtgcgcgacgtatctgaagagcggtgggggcgtgtgcgtgtGACGTATCTGAAGAACGGTGTGGGCGTGTGCgtgtgacgtatctgaagagcggtgggggcgtgtgtgcGCGATgaatctgaagagcggtgggggcgtgtgtgcGCAACGTATCTGAAGAACGGTGTGGGCATGTGtgcgcgacgtatctgaagaACAGTGGGGGCGTGTGCGTGTGACGTATCTGAAGAACGGTGTGGGTGTGTGCGCGTGACGTATCTGAAGAACAGTGGGGGCGTGTGCGTGTGACGTATCTGAAGAACGGTGTGGGCATGTGTGCGCAACGTATCTGAAGAACAGTGGGGGCGTGTGCGTGTGACGTATCTGAAGAacggtgtgggtgtgtgtgcgcaACGTATCTGAAGAACGGTGTGGGCGTGTGtgcgcgacgtatctgaagagtggTGGAAGCGTGTGtgcgcgacgtatctgaagaacagtgggggcgtgtgtgcgcgacgtatctgaagaACGGTGTGGGCGTGTGTGCGCGACATATCTGAAGAACGGTGTGGGCATGTGTGCTTAACGTATCTGAAGAACAGTGGGGGCGTGTGCGTGTGACGTATCTGAAGAacggtgtgggtgtgtgtgacaTATCTTAAGAACGGTGTGGGCGTGTGtgcgcgacgtatctgaagaACGGTGTGGGCGTGTGCgtgtgacgtatctgaagagcggtgggggcgtgtgtgcGCGATGAATCTGAAGAGCTGGGCAGGATGCGGGGGACActatttaaggaccgggcgggagacgcgcatctgggagtctcccgcaaatacATAGACtttcgggagacttgggatgtctggatggtaaagtctagatgggatacgcAGCCGGCTGGAAGTATCAGTATAGCAgcatttattatgacactgtataacaataattaatatttcatatttgctgtgatggttgggtttaggtgttggGGGTAGACGTTagtaaaattcaataaataataaaaataattcttgttaacttccgtcACAATACAGGAAAAAACGTACGGTTCATGCCTTTGAAGTCAAACGGTAATGTTTTTCCAGGAGgtcaaggttcagctggtgaacaGGTATCTTTCTTTGACACACAGATGaactgttcaccacaaaactagcaacgtgagctaacaaaatcaataagtTAGATTTGATTtcttcatgtggactttaaaacaagcaaaataatcagccaatcaggtgAGTGAATTAGCGAAAACAAGATTGCTGACCTCATTAGCAGATTAATTTGCATATCTCACTTAATTcattatttctgtaaacaaaacaGTATGTTCTTATTGTCTAGAAGTTGCTGATTGGTTAAATAATTGTTTGATATTCTGATTGGAAACGTGGTCAGACAGTGTGTTTGTTTGCAGTGAGGGTAAAGTCAGCATGTTGTGTGTTTTTCAGCAGCGTTGGAGAACGGATCTTCAGCGCATCTGCTGTTTTCCAGACACTGATCGATCTTATATTTGAGGACGTTTTACACAACGCTCGAACCCTTCCGCTGTTTTACGTAGATTGATCAAGGACACGACGATAAAGCAGAAAAACTTCCTGTAAATACGAACTGAGAGATGTGACGTCTCGGGACATGCTTCTCTTTCACTTACGAGTTTATGGTTGAAAAAAGTCTTAAAGATTATGTAGATGAACTGATGACACTGTCTTCTCTTTTCGCTCTTTTCTCACTCTGTCTCTTTCGGTCTTTCTCGCTCTCCGAGAGTGTTTCATGTAAAAAGATAAGACatgttttttaatcaaaataaaatggaCAAAAGTGAAGGTTCGCCGTGTTCTTCTTCAATCTCGCCTGCATTAATGATGTTAAACATGCACCAGGAGGTCAAGGTTCAGTTGGTGAACGGGTGTTTTTCTAGCAGTTGTGGACTGGGTTGATTTTTtttagcatgctattagcattAAATGTTTTATCTAGTGATTAGCTTTTAAAGT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0048880 sensory system development biological_process
GO:0023061 signal release biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0003008 system process biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0030133 transport vesicle cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0000149 SNARE binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002891 True 2195 lncRNA 0.47 3 58778053 58782292

Neighbor

gene id symbol gene type direction distance location
XLOC_000873 CABZ01084617.1 coding upstream 34016 58735326 ~ 58744037 (+)
XLOC_000872 LO017784.1 coding upstream 96508 58677434 ~ 58681545 (+)
XLOC_000871 NA coding upstream 108978 58646685 ~ 58669075 (+)
XLOC_000870 si:ch73-221f6.4 coding upstream 145989 58628165 ~ 58632064 (+)
XLOC_000869 zgc:174890 coding upstream 155555 58620953 ~ 58622498 (+)
XLOC_000875 tmed1b coding downstream 58597 58840889 ~ 58850686 (+)
XLOC_000876 NA coding downstream 70878 58853170 ~ 58854377 (+)
XLOC_000877 trip10b coding downstream 139735 58922027 ~ 58935898 (+)
XLOC_000878 NA coding downstream 173774 58956066 ~ 58959457 (+)
XLOC_000879 NA coding downstream 192725 58975017 ~ 58976687 (+)
XLOC_000865 NA non-coding upstream 182286 58586353 ~ 58595767 (+)
XLOC_000864 NA non-coding upstream 192921 58577919 ~ 58585132 (+)
XLOC_000837 BX927298.1 non-coding upstream 604464 58160151 ~ 58173589 (+)
XLOC_000829 BX469930.2 non-coding upstream 760689 58003615 ~ 58017364 (+)
XLOC_000888 FP015850.1 non-coding downstream 349000 59131292 ~ 59131406 (+)
XLOC_000889 NA non-coding downstream 355591 59137883 ~ 59138594 (+)

Expression


Co-expression Network