RNA id: TCONS_00001319


Basic Information

Item Value
RNA id TCONS_00001319
length 2221
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id XLOC_000826
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57926893 ~ 57931592 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acgcactaacttgcacagcattgaatggaaaaggctttatccatgtccagttgaggggcatcaagaacacgcagatggcctaaacctgtatcagcctggacagactgcagttctgctattccacgccaaggcttttgtatggatgtctgactactactgtgttctctaaaggtattactggagcaaaacaacagcacctgttacagtgaaatttgtattaataaaaatagtgatacatgtgtagcaggtccagtacatttgtcataaaggttaaatcacagtaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtgtgtgcaaactgctcgtagtaaacacacatgctgatctgatgcgggagagatatacgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagttgaaatcactgaagtcccatggaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggactattgctgtctgtagaggatgaggagcatttaatctaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtacttaataacagaacctatatgaacagttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccatgtgaacatgcaatttttatgatactaataataatagaataacaaattgcttttactgttgtgtttgtgagagagaatcaaactatatattctacacattttcttgatgatttactgaaatatttgtctacatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatgtactttatgcaaaaaaaaaaaaaaaaaaactactaaatatttagcatgcagacctgcaaagtgaaggagtaatgtcaggtttagattatagcatgagttttcactattgtgaaagtgaagccattcattcacaatgaattggaatagcaaacctcattattgattttgtaggaaactcacctggtgtttgagaaataaatatgtatttaactgctagactgatatagatgtttAAGTGTTTTACGCTTGATTTTTTTGTCCCAGGGCCATCTTTTACCTCAAGTTTTTCTCCcaacctataaaacctcaaacagatgtaatgtattttacTTGTGATTCTTAtttgtgagtgatgttttttatttaattttttttattgcagccactttaaaaatgggtattttgtaaactttgtaaacggaattgtattttggagactgtgatggttgaagcatagtttagttacttagtttaatttagttagtatctgtctttctgaagacggtaacactttacaataaggttgtattagtaagtgttaatgtatttactaacatgaacaaagaacaatgaagcatctttcaaataaagaaagtacagttcatgtcagctcagtgcattaatgttaacaagcatacattttgattttaatagcatcgggacatatttcaattaattaaatgattaataaatgctgtacaagtatttgttctttgttcatgttagtaaacattaactaactttaattcatgaaacctaattaaaaagtgactatttaattgtatgcctttttctgtatttgagcatgtatagtaacctgcatggttttaatgatgtatgctgtaaatgttgctgtatatttagaataattgaaataatgaggtgtgtattaaataaattgatacacaggctaagttgtgtatttgtgtcgtgtatttttaattagtaaaaatttgtttgctatatttatggactttgcgttgtatgtaattcctatttaacttacgttgaaatgtatgacggtgaaacaacgtcacggtatcaacgttgatccaatttgcaaaaccgaaaggtaattcaaccttcattcaacgtctacaaaacgaccaTAATTCACCCATGAAAaaggtaagagtgaaacaacgtCGTGAAttcaacggtgaatcaccggtggtgttccgacggtgaaacaacgtcactatataaacgttgatccaatttgcaaaatcgaaaggtaattcaacgttgatccaaccatagacctgacgttgattcaacgttgaatcaccgttgaaatgccggctgggttatttaa

Function

GO:

id name namespace
GO:0001501 skeletal system development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0007601 visual perception biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0045202 synapse cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0005615 extracellular space cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002890 lncRNA upstream 185538 57742079 ~ 57742436 (+) True XLOC_000822
TCONS_00003262 lncRNA upstream 215738 57710298 ~ 57712236 (+) True XLOC_000819
TCONS_00002888 lncRNA upstream 362738 57541116 ~ 57565236 (+) False XLOC_000818
TCONS_00002889 lncRNA upstream 362738 57562842 ~ 57565236 (+) True XLOC_000818
TCONS_00002887 lncRNA upstream 498859 57419370 ~ 57429115 (+) True XLOC_000816
TCONS_00001322 lncRNA downstream 52382 57983974 ~ 57984888 (+) True XLOC_000828
TCONS_00001323 lncRNA downstream 72023 58003615 ~ 58017364 (+) True XLOC_000829
TCONS_00003265 lncRNA downstream 594799 58526391 ~ 58530485 (+) True XLOC_000862
TCONS_00003266 lncRNA downstream 646327 58577919 ~ 58585132 (+) True XLOC_000864
TCONS_00003267 lncRNA downstream 654761 58586353 ~ 58588475 (+) False XLOC_000865
TCONS_00001317 mRNA upstream 134245 57787642 ~ 57793729 (+) True XLOC_000825
TCONS_00001316 mRNA upstream 148126 57774454 ~ 57779848 (+) True XLOC_000824
TCONS_00001314 mRNA upstream 164626 57757456 ~ 57763348 (+) False XLOC_000820
TCONS_00001315 mRNA upstream 164798 57761632 ~ 57763176 (+) True XLOC_000820
TCONS_00001313 mRNA upstream 170206 57752724 ~ 57757768 (+) False XLOC_000820
TCONS_00001320 mRNA downstream 35239 57966831 ~ 57980061 (+) True XLOC_000827
TCONS_00001321 mRNA downstream 50231 57981823 ~ 57991025 (+) False XLOC_000828
TCONS_00001324 mRNA downstream 107959 58039551 ~ 58049515 (+) True XLOC_000830
TCONS_00001325 mRNA downstream 134517 58066109 ~ 58076716 (+) False XLOC_000831
TCONS_00001326 mRNA downstream 136223 58067815 ~ 58070078 (+) True XLOC_000831
TCONS_00001304 other upstream 572941 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 2630723 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 2799395 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 3741818 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 3866764 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001335 other downstream 228559 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 1199700 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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