RNA id: TCONS_00001324


Basic Information

Item Value
RNA id TCONS_00001324
length 3397
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_000830
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58039551 ~ 58049515 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtatgctaaaatcagtaagCAGTTTGCATGTTTCTGTCTTCGCCAGTGTTTAGTCTCGATTAGTTTTCAGCGCACTTTCGTTATTCTCCGTGTAAATGTCGCTTGAGGATGACCTGTCGTGTGCGGTTTGCACTGATGTCTTCCGTGATCCGGTGTTGTTGGGCTGTGGGCACAGTTTCTGCCGTCAGTGCATCTATGATCACTGGTCTTCCAGCGGAACCAGAAACTGCCCGATCTGTCGGCAGGTTTCACGGCAGCGCCCGGTGGCCAATGTTAGCCTGAGAAACACCTGCGAGTCTTACCTGCTGCGGGAGCAAAACACCAGGACAGACCGCAAAGATGAGGATGAACAGCCGTGTCCGGTACACGGAGAGAAGATCGAGCTCTTCTGTCAAAACGATGAGCAGCTTTTATGTGCGAGGTGTAGGAAATGTGGACACGGATGGCATAAGACAATGCCCTTACAACAGGCTGTACGACAACGCAGGGGAAAGCAGAAAGCAGCTCTTCGATCCGCCGAAAAGACTTTGTTGTCATTACAGAACGGTACAGCGCGGGATCCCAAAATCTCTAGGTACATTCAGTCACAGGTTCAGGAGACGGAGAGGAAAATAAAGGTGGAGTTTGAGAAGCTCCATCAGTTCCTCAGAAAGGAAGAGGAGAGCAGAATAATGTCTCTGAATGAAGAAGAGGACGAAAAAAGAGGAGCGATTGACCGATCAATACAAGGAGAAATACTGACCATTTGTGACAGAATCAAAGAGCTGAAAGCAGGAATTGAAGACGACGACATCAGCTTTCTGCAGAATTATCAGAGGATCATGAACAGgagtGAGTACACACTCCCAGAACAGGAACTGAGTTCAGAAAGTCTTATCGATGTTTCCAAACATCTGGGCAACTTGAAGTATCAAGTGTGGGAGAAGATGAAGGAAATCTGCCCCTACTACCCGGTGATCCTGAACCCAAACACTTCTGCACCACAGCTCTCTGTGTCAGACGATCTGACCTCTGTGACCTCATCAACCCATCGACAGAACCAAACCAGCGATCTTCCTCTGCACAGGAGCCGTGTGGTGCTGGGCAGCGTGGGATACAGTGATGGAGATCACACATGGGAGATTGAGGTGGGAAAAAGTCGACACTGGAGCCTCGGAGTGTGTCTTGAATTGAAGGGAAAACCCATTACGCAACCGTTGATCCCTGCAAATGGCTTCTGGGGTCTCAAACGTGAGGGATACATGTACCACTTGATGACCGCTGAGGCGTGTGAAATAAACATTAAGAGAAATCCTGAGGTAGTGAGAGTAAAGCTTGATTATGTGTGTGACGACACAATGGAAAAACAACGCTGGAGGAGGGTGAGCTTTATTGATGCCAGCTGTGATGCGGTTATTGAAAGATTTTCTAGAGTGCCGCTGCAGCATAAACTCTTTCCCTTTGTGATCCCAGAAGATCAGTCCATCCCGCTGCGCATCGCTCCGGCTAACATTATTCTGACCGTTGAAAAGAAAATGTCCTTCATGGAGAGACATGAACTCTTGATTAgggtctgttttggttttgtcatGCTTATAATAATGATTCTCTTACCGAAGAATGAGCAGCGAGGCAAATAAAATATGAGTGCAATAGTCACACATACTGTAATTGTAGCTCAGATAACTTACAGAGAAACGTGCTTTGCACCTAAAAATGATCCTAAAGCATTCCCGTGTTTTATATACTGTAGtcagcatttgaagtggatcaaaacctttaatcAAAGTTGTCCTACAATGTTCGAACAACACCCGTTTCTTGTCttaggacagtggttctcaaactgtggtacgtgtaccactagtggtacgcaggcttccttctagtggtacgcggaagaatgaacacatttcaaaatgtattaaaaatgatgtatataatatgccatatatgacatatagcctgtatttctgaggtaatctgccacgtttttttaactgtgcagagttgtagctgctttactgggtctactacgctactgtatttcaatactgctcattttgatgGTACTTGGAAAGACATTTTTTCTggggtggtacttgatgaaaaaagttttagGACCCCTGTCTTAGGACAATTTAGGAAAAACTTTTTGATGTTGATGACTGTATGTGATCACATATGTGGTGTCACTATTACAaggccttcattcattcatttccctttggcgacccctgaatagGGATGCGACggttaaccgatttcactattaaccgcgatTTACtttgtcacggttaattaatcgtaaaggcttctcaacaccgtgttcttgcacggaacaaaactgcagcaactaagCAAAGTTATGCCCACGGTGAGCTAGTTTGTACatcgagactaataaccacactgGACTAACTatgactgaggctattaactaaggcatGCTCGttgaagttcgttatttccaatggagggatgTGCACGCAACGCGTTCACGCTTTTCAGGTGCACCTAATTGCGATGACAAGGGGGCTTTTGTGACCGGGGAACTGCATACGGCTGAAGTTTGAGGAGGAAGGAGTGGAAAGTACACCCACTTTAACCCACTTACAAATAATGGCgccgatgagagcgatcatgtggcgagtgttgatccaccagctgagatcaattgAGTGTTTTCAGAGAGATTGCTTAAAGACTCAAGCCTGTTTCACTACGCAAGCGTGAGAAGCTAGTGTTTTTTTTTGGcctccatgttaacagattagagctttcatacttcACACAGCAGCACGTCAGCGTGAGCATCACTGAAGCTGCAGTGCCGTGACAGTTTTGGCGTTGGTCTATTTTTGCTGTGCTGCACGCGCTCAATTAAAGTGGtaatgcattgataatgaccaaaaacaaattgaatgacagtaaaagtagcaattttaccctataaatgcatcaataataataataataatattcactgatatttatatagtcaatcaaatgaactttaaaaacgtcaacaaatatttatttaggcctgaactacaaatacaaatttaaaataattttaaactagCGGGGTTTTGAAATCAATGAATGCAAATAATCGAGATAACCATAAAACTGTGATTATTTCTTAGACTATAATCGTATACCCAAAATTTATAATTGCATCCCTATCCctgatgaaccgccaactattccggcatatgttttacacagtggatgcccctccagctgcagcTCAGTACTGTCAAACATTACAGGGCAGTTTCAGTCTAATCCTGTCTTCTGTTCAGTTTTCACATTGTGTTGGAGGAGGGACTTTGTTTTCACagaactaaaataaaatcaagctgTTAATTTTTGTTCTTAGTTCACTTAAAAAGGACAAATAAATATCTATAAC

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-17 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human TRIM35 (tripartite motif containing 35).

Ensembl:

ensembl_id ENSDART00000073777

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001323 lncRNA upstream 22187 58003615 ~ 58017364 (+) True XLOC_000829
TCONS_00001322 lncRNA upstream 54663 57983974 ~ 57984888 (+) True XLOC_000828
TCONS_00003263 lncRNA upstream 107959 57926893 ~ 57931592 (+) False XLOC_000826
TCONS_00001318 lncRNA upstream 107959 57927489 ~ 57931592 (+) False XLOC_000826
TCONS_00003264 lncRNA upstream 107959 57927580 ~ 57931592 (+) False XLOC_000826
TCONS_00003265 lncRNA downstream 476876 58526391 ~ 58530485 (+) True XLOC_000862
TCONS_00003266 lncRNA downstream 528404 58577919 ~ 58585132 (+) True XLOC_000864
TCONS_00003267 lncRNA downstream 536838 58586353 ~ 58588475 (+) False XLOC_000865
TCONS_00003268 lncRNA downstream 538705 58588220 ~ 58595767 (+) True XLOC_000865
TCONS_00003269 lncRNA downstream 597170 58646685 ~ 58669075 (+) True XLOC_000871
TCONS_00001321 mRNA upstream 48526 57981823 ~ 57991025 (+) False XLOC_000828
TCONS_00001320 mRNA upstream 59490 57966831 ~ 57980061 (+) True XLOC_000827
TCONS_00001317 mRNA upstream 245822 57787642 ~ 57793729 (+) True XLOC_000825
TCONS_00001316 mRNA upstream 259703 57774454 ~ 57779848 (+) True XLOC_000824
TCONS_00001314 mRNA upstream 276203 57757456 ~ 57763348 (+) False XLOC_000820
TCONS_00001325 mRNA downstream 16594 58066109 ~ 58076716 (+) False XLOC_000831
TCONS_00001326 mRNA downstream 18300 58067815 ~ 58070078 (+) True XLOC_000831
TCONS_00001327 mRNA downstream 29538 58079053 ~ 58088949 (+) True XLOC_000832
TCONS_00001328 mRNA downstream 42144 58091659 ~ 58102982 (+) False XLOC_000833
TCONS_00001329 mRNA downstream 45036 58094551 ~ 58098418 (+) True XLOC_000833
TCONS_00001304 other upstream 684518 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 2742300 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 2910972 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 3853395 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 3978341 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001335 other downstream 110636 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 1081777 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000400_00110097_00112401.mRNA True 2292 mRNA 0.41 2 CI01000400 109281 ~ 113088 (+)