XLOC_000833 (si:ch211-114l13.1)


Basic Information

Item Value
gene id XLOC_000833
gene name si:ch211-114l13.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58091659 ~ 58102982 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001328
GTTTTCAGATAAAAAGACGAAGGAGACCGTTCTGGTTGTCTCAAAGATGTCATAATTTTTCCATTTAAACATGAGGGACGCTGCTTTTGGGTTGTGCTGATGTGGCGTGCACGACCACTATAGGCTACAACATTTTACTCGTCACAGCGGAATCAGTTTCAATTTCAACTTGTTGGCCGTCTCATTCATCAATGACCGAGGAGACGAAAAAGTAAAATGGACACTAAGGAGGACACTTCCTCTGAATCAAGCTGTGATGACCCCACAGAAAATCTCTCTGCTCTTAGTGGTCCAACAATGACCTCAGTCCTCGGCAAGAGAAAGAGATCAGCTTCTCCAGAACCCAGTGGTGTGTCTGTGAAGAGTGACTGGTCCATTGATCCACCTCCGGTTTTTAGTGATGCTCCAGTGACCTCTGACCCCAGTCATATCCACATCAGGCAGAAAACAAAAACATCCATTCAGACAGAAACTGGAGTCCTGCAGAGAGTCAAAgaccagcacaaaaccagcatgaagaacaagtatgagagattatttgagggaaacACACTCCAAGAGAACCAAACCCTCCTGAACCGCATCTACACCCAGCTGTACATCATAgagggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaacagCCAGAACAAAACAATCCCAACACACTCCaatctactgcaatgacatctttaaagagGAGAAAGAGCAAATCAAGACTGTTCttactaaaggcatcgctggaatcggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacacacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgaggagtgtaaagttgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagACGCTCAGAAAGTTTGTGATGTGACTGAgacttcatcagtggctgtgttgatgtcaAAGCTGATGAAAGGAgagctgcttccctctgctctcatctggatcacctccagaccagcagcagccaatcagatcccctccaaatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagtgagcagcatcaagccagcagaatcatctcacacatcagaagagcaagaagcctccacatcatgtgccacatacccgtcttctgctggatctcatccactgtgcttcagaagctcctggaagaagatctgagtgcagaaatccctcaaactctgactgaaatgtacatccacttcctgctgattcagatcaacatgaggaatcagaagtatgaagagagagatccagagaatctcctgcagtccaacagagaaGTGATtgtcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcgtAAACGTCTCTGACAcctcagtgtattctgggatttgcactgagatctttaaggaggaatctgtgattcagcagaggaaagtctacagctttaTCCATCTGAGCgttcaggagtttctggctgctttccATGTGTTTCAACTTTATGTGATGCAGAATATGGACACATCTCGTTTTTTAGATGTAATTCATAGTCTGCATAAGGAAGCAGTAGATAAAGCCACTGAAAGTGAGAATGGGCGTCTGGATCTGTTtctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctactgacacacacagagaagagctcagagagcatcaggagaagcacacagtacattaaagagaAGATCAGAGATGGACATGGACTCTCcactgaaagatccatcaatctgttcctctgtctgctggaagtgaaagatcagactctgtccagagagattcaggagtttgtgaaatcagacaaacagtcagagaagaaactctctcctgctcactgctcaacaatcgcCTACATGCTTCAGATGTCAGAGGAGGTGCTGGATGAGCTGGAGCTCCACAAATACAACACATCAGATGAGGGCAGAAGAAGACTGATACCAGCCGTCAGCAACTGCACAAGAGCTCTTCTTGCTGGCTGTAATCTCTCTGCTCAGGATTGTGAAATTGTGTCGTCAGTTcttcaatcctcaaactgtgtcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgatggactgaagagtccaaactgtcAGCTGGAGATACTGAGgttgtctggctgtatggtgacagaggaaggctgtggttttctatcttcagctctgagttcaaacccctcacacctgagagagctggatctgagctacaatcacccAGGACAATCAGGAGTCCAGCTGCTCCAACACACACTGGAGGATTCTCACTACACACTGCAGAAACTCAATTTAGATCATGGAGAACAGTCAAGAATCGCACCAGGACTAAAAAAATATGCGCTTCATCTCACACTGGATTCCAACACCGCACACAATAAACTCAtcctgtctgaggagaacagaaaaATCACATTTGTGGAAGAGTGTCAGCCGTATCCTGAACATCCAGAGAGGTTTGCGCACCATCCTCAGATTCTGAGTCGAGAGAAGCTgactggacgctgttactgggaggttGAACGGAGTGGCGCTAGTGTTGATATTGCAGTGGCTTATAAGGAAATCACCAAAAAAGATGGGAGTGACTCTTGGTTTGGGTACAATGATAAATCCTGGAGTCTCTACTGGTATACTAATGGATTCACTGCATGGCATATAAATGAGAGCCATCCCATACCAGCTCTTTCAGCACAATCTAATAGAGTAGGAGTGTATGTGGACGTGCCGTCCGGCTCTCTGTCCTTCTACAGtgtctctgacacacacacactcacacacttacacacattcaACACCACATTCACTGAACCCCTCTATGCTGCATTGAGAGCTTATCCTCAATCCTCTGTGTCTCTGTGTCAGATTTAACATCATTCAGTGATCGCAGAGACATCACAAACAACCAAGATATTGTTCAATTACAAGTGTGTAAGTGTGTTCTAGTGCAGttgttcccaacctttttctttggggcccccccatgaacatatacaaacattg
>TCONS_00001329
AATTATTGCATTACCATCAAAAACTACAATAGAATTGTTCCTTATTCAAACACTATTATTGTACTACATAAAACTGACGTCACTGCTTTAAATGATCAGTTTGTCTAGTTAACATCTTTATCTTTTAAGGAAAAAGTAAAATGGACACTAAGGAGGACACTTCCTCTGAATCAAGCTGTGATGACCCCACAGAAAATCTCTCTGCTCTTAGTGGTCCAACAATGACCTCAGTCCTCGGCAAGAGAAAGAGATCAGCTTCTCCAGAACCCAGTGGTGTGTCTGTGAAGAGTGACTGGTCCATTGATCCACCTCCGGTTTTTAGTGATGCTCCAGTGACCTCTGACCCCAGTCATATCCACATCAGGCAGAAAACAAAAACATCCATTCAGACAGAAACTGGAGTCCTGCAGAGAGTCAAAgaccagcacaaaaccagcatgaagaacaagtatgagagattatttgagggaaacACACTCCAAGAGAACCAAACCCTCCTGAACCGCATCTACACCCAGCTGTACATCATAgagggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaacagCCAGAACAAAACAATCCCAACACACTCCaatctactgcaatgacatctttaaagagGAGAAAGAGCAAATCAAGACTGTTCttactaaaggcatcg

Function

symbol description
si:ch211-114l13.1 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-109 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

Ensembl:

ensembl_id ENSDARG00000093323

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001328 False 3288 mRNA 0.46 9 58091659 58102982
TCONS_00001329 True 684 mRNA 0.42 3 58094551 58098418

Neighbor

gene id symbol gene type direction distance location
XLOC_000832 si:ch211-114l13.13 coding upstream 2710 58079053 ~ 58088949 (+)
XLOC_000831 si:ch211-114l13.4 coding upstream 14943 58066109 ~ 58076716 (+)
XLOC_000830 trim35-1 coding upstream 42144 58039551 ~ 58049515 (+)
XLOC_000829 BX469930.2 coding upstream 74295 58003615 ~ 58017364 (+)
XLOC_000828 si:ch211-114l13.12 coding upstream 100634 57981823 ~ 57991025 (+)
XLOC_000834 si:ch211-15j1.5 coding downstream 13918 58116900 ~ 58132014 (+)
XLOC_000835 si:ch211-15j1.4 coding downstream 34038 58137020 ~ 58145365 (+)
XLOC_000836 si:ch211-15j1.3 coding downstream 47018 58150000 ~ 58155977 (+)
XLOC_000837 BX927298.1 coding downstream 57169 58160151 ~ 58173589 (+)
XLOC_000838 si:ch211-15j1.7 coding downstream 73041 58176023 ~ 58179756 (+)
XLOC_000826 NA non-coding upstream 160067 57926893 ~ 57931592 (+)
XLOC_000822 NA non-coding upstream 349223 57742079 ~ 57742436 (+)
XLOC_000819 NA non-coding upstream 379423 57710298 ~ 57712236 (+)
XLOC_000818 NA non-coding upstream 526423 57541116 ~ 57565236 (+)
XLOC_000864 NA non-coding downstream 474937 58577919 ~ 58585132 (+)
XLOC_000865 NA non-coding downstream 483371 58586353 ~ 58595767 (+)
XLOC_000871 NA non-coding downstream 543703 58646685 ~ 58669075 (+)
XLOC_000874 NA non-coding downstream 675071 58778053 ~ 58782292 (+)

Expression


Co-expression Network